Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq79005 293 6e-74 seq77627 120 8e-22 seq4177 87.8 5e-12 >seq79005 Length=17376 Score = 293 bits (324), Expect = 6e-74 Identities = 635/950 (67%), Gaps = 0/950 (0%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| |||||||| || || | | ||| || || || | || ||| | || || Sbjct 1451 TTCACCCACGCCACACCGACCCTCTTCAACGCCGGCACCCCCCGCCCGCAGCTTTCGTCG 1392 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || || | |||||||| || || ||||||||||||| ||||| || ||| | Sbjct 1391 TGCTTCCTCCTCACCATGAAGGAGGACTCGATCGAGGGTATCTACGACACGCTCAAGCAG 1332 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 || || || || |||||| || ||||| || || || | |||| | || || Sbjct 1331 TGCGCCCTCATCTCCAAGTCAGCTGGCGGTATCGGCGTCGCTGCCCACCGCATCCGCGCC 1272 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 ||| |||||||||||||| || |||||| || || || || ||||| || Sbjct 1271 TCCAACTCGTACATTCGCGGCACCAACGGCACCTCGAACGGTCTCGTCCCGATGCTGCGC 1212 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 || | || | || || | |||||||||||||| || || |||||||| || || ||| Sbjct 1211 GTCTACAACGACACCGCCCGCTACGTCGACCAGGGCGGCGGCAAGCGCAAGGGCGCCTTT 1152 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC 363906 || || ||||||||||| || ||||| || ||||| ||| | |||||| ||| ||| Sbjct 1151 GCCATCTATCTCGAGCCGTGGCACGCCGACATCTTTGACTTTTTGGAGCTCAAGAAGAAC 1092 Query 363907 ACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCAT 363966 || || ||||| || || || || || ||||| | || ||| | | |||| Sbjct 1091 CACGGCAAGGAGGAGAACCGCGCTCGCGACCTCTTCTACGGCCTGTGGATCCCCGACCTC 1032 Query 363967 TTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCA 364026 || ||||||||||| ||| | || | ||||| ||||| ||||| |||| || Sbjct 1031 TTCATGAAGCGCGTCGAGTCTGGCGGCGACTGGTCGCTCTTCTGCCCCAACGAGGCGCCC 972 Query 364027 GGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAG 364086 || || | || ||||| | || | || | || || || || |||| Sbjct 971 GGCCTGTTTGACTCGTGGGGCAAGGAGTTTGAAGAGAAGTATGAGCGCTACGAGCTGGAG 912 Query 364087 GGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAG 364146 || || || | | || ||| |||| |||||||| ||| | || |||||| Sbjct 911 GGCCGCGCCCGCCGGGTGGTCAAGGCCCAGGAGCTCTGGTTTGCGATCCTCGAGTCGCAG 852 Query 364147 ATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAG 364206 || ||||| || || ||||| ||| | ||||| || | |||||| ||||||| |||||| Sbjct 851 ATCGAGACTGGCACGCCCTACATGCTCTACAAGGACGCCTGCAACAGCAAGTCGAACCAG 792 Query 364207 CAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCT 364266 |||||||| || || || ||| | ||||| || || ||| | || | |||||| | Sbjct 791 CAGCACCTGGGCACGATCCAGTCGTCGAACCTGTGCACGGAGGTCATCCAGTACACCTCG 732 Query 364267 CCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGAT 364326 |||||||| ||||| || ||||| || |||||||| || || ||| | || Sbjct 731 CCCGACGAAGTGGCCGTGTGCAACCTGGCCTCGATCGCCCTGCCCAAGTTCATCGTCGAC 672 Query 364327 GGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGAC 364386 || ||||| |||||| | || | |||||| | | | || || ||| || Sbjct 671 GGCCAGTTTGATCACCAGAAGCTGTTTGACGTGGTCAAGGTCGTCACCAAGAACCTCAAC 612 Query 364387 AAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCAT 364446 ||||| ||||||| || || || || | || || ||| || || ||| || Sbjct 611 AAGGTGATCGACATCAACTACTACCCGGTGCCCGAGGCCCGCACCTCGAACCAGCGCCAC 552 Query 364447 CGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCT 364496 ||||| || || |||| || |||||||| || ||||| || ||||| || Sbjct 551 CGCCCCATCGGCATTGGCGTGCAGGGCCTGGCCGACGTCTTCATGATCCT 502 >seq77627 Length=171561 Score = 120 bits (132), Expect = 8e-22 Identities = 275/412 (67%), Gaps = 8/412 (2%) Strand=Plus/Minus Query 363820 GGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATT 363879 || || |||||||| || || || || || || || || ||||| ||| | || || Sbjct 145137 GGCGGTGGAAAGCGAAAGGGAGCCTTCGCGATCTACCTGGAGCCCTGGCATTCGGACATC 145078 Query 363880 TTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTG 363939 |||||||| || || ||| ||| ||| || || ||||| || || || || || Sbjct 145077 TTTGAGTTCCTCGATCTCAAGAAGAACCACGGCAAGGAGGAGAACCGCGCTCGCGACCTC 145018 Query 363940 TTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGG 363999 ||||| || || ||||| | || | || ||||||||||| ||||| ||| | ||| Sbjct 145017 TTCTACGCCCTGTGGGTCCCGGATCTATTCATGAAGCGCGTCGAGGCTGGTGGCTACTGG 144958 Query 364000 TCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTT 364059 || || || ||| | ||| || |||||| || || ||||| ||| | | | Sbjct 144957 TCGCTGTTCGACCCCAATGAAGCACCGGGTCTTCAGGACGTTTGGGGAGACCAGTTCGAG 144898 Query 364060 G--CTCT--ATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACA 364115 | |||| || ||| ||||| ||| || || || || || ||||| Sbjct 144897 GAACTCTACATCCGA----TATGAGCGGGAAGGCCGCGCCCGACGCACCATCAAGGCACA 144842 Query 364116 GAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTA 364175 | |||| ||||| || ||| | || || || | ||||| || || ||||||||| | || Sbjct 144841 GGAGCTGTGGTTCGCGATCCTCGAGTCACAAGTCGAGACCGGCACGCCCTATATGCTCTA 144782 Query 364176 CAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAG 364227 || || | |||||| |||| ||||| ||||||||||| || || ||| Sbjct 144781 TAAGGACGCATGCAACGGCAAAAGTAACCACCAGCACCTTGGCACCATCCAG 144730 Score = 100 bits (110), Expect = 7e-16 Identities = 190/277 (69%), Gaps = 2/277 (1%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 |||||||||||||| || || | | ||| ||||| || | | || |||||| | Sbjct 145480 TTCACGCACGCCACCCCGACCCTCTTCAACGCTGGCACGCCCATCCCGCAGATGAGCAGT 145421 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 |||||||| | | |||||||| || |||||||| || |||| || || || || Sbjct 145420 TGCTTTCTCTTGGATATGAAGGAGGACTCCATCGACGGCATCTACGAGACCCTCAAACGG 145361 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 || || || || ||||||| || || || || || || | | ||||| | || || Sbjct 145360 TGCGCGCTCATCTCCAAGAGCGCGGGAGGCATCGGCGTGGCCGTGCACAAGATCCGCGCG 145301 Query 363727 CAGAACAGTTACATTCGCGGCA-CAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785 ||| ||||||||||||| || |||| ||| ||||| || | |||||||| || Sbjct 145300 GCCAACTCCTACATTCGCGGCACCAACGGGA-CCTCCAATGGCCTCATCCCCATGCTGCG 145242 Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGT 363822 || | || | ||||| | |||||||| || ||| Sbjct 145241 CGTCTACAACGACACTGCCCGCTACGTCGATCAAGGT 145205 >seq4177 Length=147 Score = 87.8 bits (96), Expect = 5e-12 Identities = 106/143 (74%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 363772 GTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAG 363831 || || ||||| || || | || | ||||| | |||||||||||||| || || ||| Sbjct 1 GTCCCGATGCTGCGCGTCTACAACGACACTGCCCGCTACGTCGACCAGGGCGGCGGCAAG 60 Query 363832 CGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTT 363891 ||||| || || ||||| || || |||||||| || ||||| || ||||| ||| | Sbjct 61 CGCAAGGGCGCCTTTGCCATCTACCTCGAGCCGTGGCACGCCGACATCTTTGACTTTTTG 120 Query 363892 GAGCTCCGGAA-AAACACGGGAA 363913 |||||| ||| || ||||| || Sbjct 121 GAGCTCAAGAAGAACCACGGCAA 143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302033560215536