Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq77962 86.0 5e-12 seq48106 84.2 2e-11 >seq77962 Length=8127 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || || || || || | ||||| |||| |||||| | Sbjct 6636 ATGCAAATCTTCGTCAAGACCTTGACGGGTAAGACTATTACTCTCGAGGTCGAGTCGTCG 6695 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || || |||||| || || || || || || || || || Sbjct 6696 GACACCATCGAGAACGTGAAGCAGAAGATTCAGGATAAGGAGGGTATTCCCCCGGACCAG 6755 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || |||| || ||||||||| || || || | | | | | | ||| || ||| Sbjct 6756 CAGCGCCTCATTTTCGCCGGCAAGCAGCTTGAGGACGGCCGTACCCTGGCCGACTACAAC 6815 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || ||||| || Sbjct 6816 ATCCAGAAGGAATCGAC 6832 >seq48106 Length=172 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 24027 ATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 24086 ||||| |||| |||||| || |||||||||||| | || || || |||||| ||| Sbjct 141 ATTACGCTCGAGGTCGAGTCCTCGGACACCATCGAGAACGTGAAGCAGAAGATTCAGGAC 82 Query 24087 AAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 || || ||||| |||||||| || ||| | || || | || ||||||||| || || || Sbjct 81 AAGGAGGGCATCCCTCCCGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTTGAGGA 23 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429521800732440