Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq78417 109 4e-19 seq79045 100 2e-16 seq78782 96.9 3e-15 seq77403 96.9 3e-15 seq75292 96.9 3e-15 seq66934 96.9 3e-15 seq69527 95.1 1e-14 seq76656 91.5 1e-13 seq66207 89.7 4e-13 seq12680 86.0 5e-12 seq67883 82.4 6e-11 >seq78417 Length=4549 Score = 109 bits (120), Expect = 4e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || |||||||||||||||| || | ||||||| | || Sbjct 762 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCCTCGAGCTGC 821 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| ||| | || || ||||| |||||| || | |||||| ||||| || | | Sbjct 822 TTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTC 881 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||||| | | | ||||||| | ||| || | ||||| || ||||| || Sbjct 882 TGCTTCACGTTCTCGATCGTGTCGCTCGACTCAACCTCGAGCGTGATCGTCTTTCCCGTA 941 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || || ||||| || |||||||| Sbjct 942 AGGGTCTTGACGAAGATCTGCAT 964 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || |||||||| || ||||||||||| || | ||| | ||||||| | || Sbjct 1071 TGAAGAGTTGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCGTCCTCAAGCTGC 1130 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| || | ||||| ||||| ||||| || | |||||| ||||| ||| | | Sbjct 1131 TTGCCGGCGAAGATAAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTC 1190 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||||| | | | ||||| || ||| || | || ||||| || ||||| Sbjct 1191 TGCTTCACGTTCTCAATSGTGTCCGAGGACTCGACCTCGAGCGTAATGGTCTTGCCGGTG 1250 Query 16913 AGCGTTTTGACAAAAATCTGCATT 16936 || || || || || ||||||||| Sbjct 1251 AGGGTCTTCACGAAGATCTGCATT 1274 >seq79045 Length=6779 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || |||||||| || |||||||||||||||| ||| ||||||| | || Sbjct 3456 TGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGACCGTCCTCGAGCTGC 3515 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| || | || || ||||| |||||| ||| | ||||| ||||| || | | Sbjct 3516 TTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTTC 3575 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||||| | | | ||||| || ||| || | || ||||| || |||||| Sbjct 3576 TGCTTCACGTTCTCAATGGTGTCCGAGGACTCGACCTCGAGCGTAATGGTCTTGCCGGTC 3635 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || || ||||| || |||||||| Sbjct 3636 AGAGTCTTGACGAAGATCTGCAT 3658 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || |||||||| || |||||||||||||||| ||| | ||||||| | || Sbjct 3228 TGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGC 3287 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| || | || || ||||| |||||| || | |||||| ||||| || | | Sbjct 3288 TTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTC 3347 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||||| | | | |||||| | ||| || | || || || || || || Sbjct 3348 TGCTTCACGTTCTCGATCGTGTCGGACGACTCTACCTCGAGCGTAATCGTCTTACCCGTA 3407 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || ||||| || || |||||||| Sbjct 3408 AGGGTTTTCACGAAGATCTGCAT 3430 >seq78782 Length=20228 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 16742 GACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCA 16801 || |||||||| |||||||||||||||| ||||||| | || || | || ||||| || Sbjct 19411 GATTCCTTTTGGATGTTGTAGTCGGCCAAGGTTTTGCCATCATCGAGCTGCTTGCCGGCG 19352 Query 16802 TAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG-GCAATTTGCTGCTTCAC 16860 | ||||| ||||| | ||| |||||||||||||||||| ||| || ||| ||||| Sbjct 19351 CAGATAAGGCGCTGGAGCTCCTTTGGCACGCCCTCTTTGTCGTGCACCTT-CTGTTTCAC 19293 Query 16861 CTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTT 16920 |||| ||||| || |||| || | ||||| || || | || | || Sbjct 19292 GGTCTCCACCGTGTCTCCACTCTCCACGTCGAGCGTGATCGTCCGCCCCGAGAGGGCCTT 19233 Query 16921 GACAAAAATCTGCAT 16935 |||||| || ||||| Sbjct 19232 GACAAAGATTTGCAT 19218 >seq77403 Length=43226 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 16742 GACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCA 16801 || |||||||| |||||||||||||||| ||||||| | || || | || ||||| || Sbjct 37388 GATTCCTTTTGGATGTTGTAGTCGGCCAAGGTTTTGCCATCATCGAGCTGCTTGCCGGCG 37447 Query 16802 TAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG-GCAATTTGCTGCTTCAC 16860 | ||||| ||||| | ||| |||||||||||||||||| ||| || ||| ||||| Sbjct 37448 CAGATAAGGCGCTGGAGCTCCTTTGGCACGCCCTCTTTGTCGTGCACCTT-CTGTTTCAC 37506 Query 16861 CTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTT 16920 |||| ||||| || |||| || | ||||| || || | || | || Sbjct 37507 GGTCTCCACCGTGTCTCCACTCTCCACGTCGAGCGTGATCGTCCGCCCCGAGAGGGCCTT 37566 Query 16921 GACAAAAATCTGCAT 16935 |||||| || ||||| Sbjct 37567 GACAAAGATTTGCAT 37581 >seq75292 Length=6898 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 16742 GACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCA 16801 || |||||||| |||||||||||||||| ||||||| | || || | || ||||| || Sbjct 818 GATTCCTTTTGGATGTTGTAGTCGGCCAAGGTTTTGCCATCATCGAGCTGCTTGCCGGCG 877 Query 16802 TAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG-GCAATTTGCTGCTTCAC 16860 | ||||| ||||| | ||| |||||||||||||||||| ||| || ||| ||||| Sbjct 878 CAGATAAGGCGCTGGAGCTCCTTTGGCACGCCCTCTTTGTCGTGCACCTT-CTGTTTCAC 936 Query 16861 CTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTT 16920 |||| ||||| || |||| || | ||||| || || | || | || Sbjct 937 GGTCTCCACCGTGTCTCCACTCTCCACGTCGAGCGTGATCGTCCGCCCCGAGAGGGCCTT 996 Query 16921 GACAAAAATCTGCAT 16935 |||||| || ||||| Sbjct 997 GACAAAGATTTGCAT 1011 >seq66934 Length=1683 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || |||||||| || |||||||||||||||| || | ||||||| | || Sbjct 288 TGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCCTCGAGCTGC 229 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| ||| | || || ||||| |||||| || | |||||| ||||| || | Sbjct 228 TTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTT 169 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||||| | | | || |||| | ||| || | || || || || || ||| Sbjct 168 TGCTTCACGTTCTCGATGGTATCGCTCGACTCGACCTCGAGCGTAATAGTCTTGCCAGTC 109 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 ||||| ||||| || |||||||| Sbjct 108 AGCGTCTTGACGAAGATCTGCAT 86 >seq69527 Length=538 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||||||||| || ||||||||||| || | || | ||||| Sbjct 309 AGCACCAAGTGGAGGGTGGACTCCTTCTGNATGTTGTAGTCAGCGAGCGTGCGGCCGTCC 250 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || ||||| || | || || ||||| ||||| ||| | |||||| ||||| Sbjct 249 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCC 190 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 || | |||||||| | | | || |||| || ||| || | || || || Sbjct 189 TGGATCTTTTGCTTCACGTTCTCGATGGTATCGCTGGACTCAACCTCGAGCGTAATAGTC 130 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || |||||||| ||||| || |||||||| Sbjct 129 TTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 98 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || |||||||| || |||||||||||||||| ||| | ||||||| | || Sbjct 528 TGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCAAGCTGC 469 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| || | || || ||||| |||||| ||| | ||||| ||||| || | | Sbjct 468 TTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTTC 409 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||||| | | | |||||| | ||| || | || || || || || || Sbjct 408 TGCTTCACGTTCTCGATCGTGTCGGACGACTCGACCTCGAGCGTAATCGTCTTACCCGTA 349 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || || ||||| || |||||||| Sbjct 348 AGGGTCTTGACGAAGATCTGCAT 326 >seq76656 Length=3208 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/200 (71%), Gaps = 1/200 (1%) Strand=Plus/Plus Query 16742 GACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCA 16801 |||||||| || ||||||||||| || | ||| | ||||||| | || ||||| || Sbjct 253 GACTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGGCCGTCCTCAAGCTGCTTGCCAGCG 312 Query 16802 TAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACC 16861 | ||||| ||||| ||||| || | |||||| ||||| ||| | ||||||||| Sbjct 313 AAGATAAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACG 372 Query 16862 TGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTG 16921 | | | ||||| || ||| || | || ||||| || ||||| || || || Sbjct 373 TTCTCAATSGTGTCCGAGGACTCGACCTCGAGCGTAATGGTCTTGCCGGTGAGGGTCTTC 432 Query 16922 ACAAAAATCTGCATT-TTGT 16940 || || ||||||||| |||| Sbjct 433 ACGAAGATCTGCATTGTTGT 452 >seq66207 Length=742 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || ||||||||||| || | ||| | ||||| Sbjct 255 AGAACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCGTCC 196 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || ||||| || | || || ||||| |||||| || | |||||| ||||| Sbjct 195 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC 136 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 || | ||||||||| | | | ||||| || ||| || | || || || Sbjct 135 TGGATCTTCTGCTTCACGTTCTCAATGGTGTCCGAGGACTCGACCTCGAGCGTAATAGTC 76 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || ||||| || ||||| || |||||||| Sbjct 75 TTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 44 >seq12680 Length=217 Score = 86.0 bits (94), Expect = 5e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||||||||| || |||||||||||||||| || ||||| Sbjct 77 AGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGACCGTCC 136 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || ||||||||| | || || ||||| |||||| || | ||||| ||||| Sbjct 137 TCGAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCC 196 Query 16844 GCAATTTGCTGCTTCAC 16860 || | ||||||||| Sbjct 197 TGGATCTTCTGCTTCAC 213 >seq67883 Length=310 Score = 82.4 bits (90), Expect = 6e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || |||||||| || |||||||||||||||| || | ||||||| | || Sbjct 152 TGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCCTCGAGCTGC 211 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| || | ||||| ||||| ||||| ||| | |||||| ||||| || | | Sbjct 212 TTGCCGGCGAAGATAAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTC 271 Query 16853 TGCTTCAC 16860 |||||||| Sbjct 272 TGCTTCAC 279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404697739233520