Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq76232 98.7 1e-15 seq77892 96.9 4e-15 seq78850 95.1 1e-14 seq78338 93.3 5e-14 seq72545 93.3 5e-14 seq66411 93.3 5e-14 >seq76232 Length=19205 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 15401 TTTATGGGACCGACGTACTATCACCGACTCAAACACATGGTAAAGGACAAGATGCACGCG 15460 || || |||||||| ||||| || ||||| || |||||||| | || ||||| ||| || Sbjct 7896 TTCATCGGACCGACCTACTACCAGCGACTGAAGCACATGGTGGATGATAAGATCCACTCG 7837 Query 15461 CGATCGCACGGACAGGTGACGACGCTCCATCGCCAGCCCAACTGCGGTCGATCGCAAGGC 15520 || ||| ||| | ||| || ||| || |||||| ||||| |||| | Sbjct 7836 CGTGCGCGCGGCCCCGTGCAGATCCTCACCCGGCAGCCCGTAGAGGGTCGTTCGCGTGAT 7777 Query 15521 GGTGGCCTCCGCTTTGGAGAGATGGAAAAGGACTGCATTCTGGTGCACGGCGCCACCCAA 15580 ||||| || || || ||||||||||| |||||||| | |||||||| |||| Sbjct 7776 GGTGGTCTTCGATTCGGAGAGATGGAGCGCGACTGCATGATCTCCCACGGCGCTGCCCAG 7717 Query 15581 TTCCTCAACGAGCG 15594 |||||||| ||||| Sbjct 7716 TTCCTCAAGGAGCG 7703 Score = 89.7 bits (98), Expect = 6e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 15042 TGCGCACGCCCGAGATTGGCGACAAGTTTTGCTCTGGTATGGCGCAAAAGGGCACGTGCG 15101 |||| |||||| | || ||||||||||| | || | | || ||||||||| | Sbjct 8616 TGCGGACGCCCCAAATCGGCGACAAGTTCAGTTCGCGCCACGGACAGAAGGGCACGGTGG 8557 Query 15102 GCATGATTTTCCCCCAGGAAGACATGCCCTTTACCGCGTCAGGCATGACGCCCGACATTA 15161 |||| || | || ||| || ||||||||||| | | ||||| || |||||||| | Sbjct 8556 GCATCATGTACCGCCAAGAGGACATGCCCTTCAACATCGAGGGCATCACCCCCGACATCA 8497 Query 15162 TCATCAACCCCAACTGCATCCCGTCCCGCATGACCAT 15198 || ||||||| || |||||| ||||| |||||||| Sbjct 8496 TCGTCAACCCGCACGCCATCCCCTCCCGTATGACCAT 8460 >seq77892 Length=46295 Score = 96.9 bits (106), Expect = 4e-15 Identities = 115/151 (76%), Gaps = 4/151 (3%) Strand=Plus/Minus Query 15050 CCCGAGATTGGCGACAAGTTTTGCTCTGGT-ATGGCGCAAAAGGGCA-CGTGCGGCATGA 15107 |||| |||||||||||||||| || | | ||| ||||||||| | || ||| | Sbjct 32847 CCCGTGATTGGCGACAAGTTTGCGTCGCGACACGGC-CAAAAGGGCGTCATGTCGCA-GC 32790 Query 15108 TTTTCCCCCAGGAAGACATGCCCTTTACCGCGTCAGGCATGACGCCCGACATTATCATCA 15167 | | || ||||| |||||||||| | || ||| |||||| |||||||| | ||||||| Sbjct 32789 TGTGGCCTCAGGAGAACATGCCCTTCAGCGAGTCGGGCATGTCGCCCGACGTCATCATCA 32730 Query 15168 ACCCCAACTGCATCCCGTCCCGCATGACCAT 15198 |||| || | ||||||| ||||||||||| Sbjct 32729 ACCCGCACGCCTTCCCGTCGCGCATGACCAT 32699 >seq78850 Length=35994 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 126224 ACCGCGTGCCAAACTGACCGTCCGGCTCCAACAACTGCACATTGTTGGCTCCCACAAAGT 126283 |||| ||||||||||| ||| | || | | | |||| ||||||| ||| |||||| Sbjct 27877 ACCGTGTGCCAAACTGGCCGGCGGGGAAGAGGAGCGGCACGTTGTTGGATCCGGCAAAGT 27936 Query 126284 CCTGCGCAAACTTGACAATGGTCTCGCACAGGTTCTGCTCGCCGTGCTTGTAGTCGGTCT 126343 ||| || | | ||| |||||| | || ||||||||| | |||| | |||| Sbjct 27937 TCTGGGCCATGTGGACGATGGTCGAGTGGAGCGAGGCCTCGCCGTGGTGGTAGGCCGTCT 27996 Query 126344 GCTCGGCCACGTAGCCGCTCAGCTGCGCAACCTTGAT 126380 ||||||||||||||||| ||||||||| ||||| || Sbjct 27997 GCTCGGCCACGTAGCCGGCCAGCTGCGCGACCTTCAT 28033 >seq78338 Length=19025 Score = 93.3 bits (102), Expect = 5e-14 Identities = 134/186 (72%), Gaps = 6/186 (3%) Strand=Plus/Plus Query 137897 TCAGCTCTTTCAGCTCGGCAATGGCCTCGTACGACTGCGGCACGTGAATGTTCATCTCGT 137956 ||||||| ||| |||||| |||| || || ||||||||||| |||||||| |||| Sbjct 16924 TCAGCTCGATCACCTCGGCCCTGGCACCGGGCGTTTGCGGCACGTGCATGTTCATTTCGT 16983 Query 137957 CGCCGTCAAAGTCGCAGTTGAAGGGCTTCGTTATGGCCAGGTTGATTTTGAGCGTCTTGA 138016 | ||||| || ||| |||| ||||| |||| | | ||||||| | || ||| || Sbjct 16984 CTCCGTCGAAATCGGCGTTGTAGGGCGTCGTGACGCAGAGGTTGAGTCGGAAGGTC--GA 17041 Query 138017 CTGGTTTGATGACC---ACCTTAAAGGCCATCATGGACGCCTTGTGCAGCGTCGGTTGCC 138073 | | |||||| || | | ||||||| ||| ||||||||||| ||| |||| Sbjct 17042 GTAG-GGCATGACCTTGACTCGATGGCCCATCATCGACATCTTGTGCAGCGACGGCTGCC 17100 Query 138074 GGTTGA 138079 |||||| Sbjct 17101 GGTTGA 17106 >seq72545 Length=6163 Score = 93.3 bits (102), Expect = 5e-14 Identities = 134/186 (72%), Gaps = 6/186 (3%) Strand=Plus/Minus Query 137897 TCAGCTCTTTCAGCTCGGCAATGGCCTCGTACGACTGCGGCACGTGAATGTTCATCTCGT 137956 ||||||| ||| |||||| |||| || || ||||||||||| |||||||| |||| Sbjct 2908 TCAGCTCGATCACCTCGGCCCTGGCACCGGGCGTTTGCGGCACGTGCATGTTCATTTCGT 2849 Query 137957 CGCCGTCAAAGTCGCAGTTGAAGGGCTTCGTTATGGCCAGGTTGATTTTGAGCGTCTTGA 138016 | ||||| || ||| |||| ||||| |||| | | ||||||| | || ||| || Sbjct 2848 CTCCGTCGAAATCGGCGTTGTAGGGCGTCGTGACGCAGAGGTTGAGTCGGAAGGTC--GA 2791 Query 138017 CTGGTTTGATGACC---ACCTTAAAGGCCATCATGGACGCCTTGTGCAGCGTCGGTTGCC 138073 | | |||||| || | | ||||||| ||| ||||||||||| ||| |||| Sbjct 2790 GTAG-GGCATGACCTTGACTCGATGGCCCATCATCGACATCTTGTGCAGCGACGGCTGCC 2732 Query 138074 GGTTGA 138079 |||||| Sbjct 2731 GGTTGA 2726 >seq66411 Length=5733 Score = 93.3 bits (102), Expect = 5e-14 Identities = 134/186 (72%), Gaps = 6/186 (3%) Strand=Plus/Minus Query 137897 TCAGCTCTTTCAGCTCGGCAATGGCCTCGTACGACTGCGGCACGTGAATGTTCATCTCGT 137956 ||||||| ||| |||||| |||| || || ||||||||||| |||||||| |||| Sbjct 2478 TCAGCTCGATCACCTCGGCCCTGGCACCGGGCGTTTGCGGCACGTGCATGTTCATTTCGT 2419 Query 137957 CGCCGTCAAAGTCGCAGTTGAAGGGCTTCGTTATGGCCAGGTTGATTTTGAGCGTCTTGA 138016 | ||||| || ||| |||| ||||| |||| | | ||||||| | || ||| || Sbjct 2418 CTCCGTCGAAATCGGCGTTGTAGGGCGTCGTGACGCAGAGGTTGAGTCGGAAGGTC--GA 2361 Query 138017 CTGGTTTGATGACC---ACCTTAAAGGCCATCATGGACGCCTTGTGCAGCGTCGGTTGCC 138073 | | |||||| || | | ||||||| ||| ||||||||||| ||| |||| Sbjct 2360 GTAG-GGCATGACCTTGACTCGATGGCCCATCATCGACATCTTGTGCAGCGACGGCTGCC 2302 Query 138074 GGTTGA 138079 |||||| Sbjct 2301 GGTTGA 2296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610787883564800