Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq79045 131 1e-25 seq69527 91.5 1e-13 seq24034 91.5 1e-13 seq28013 87.8 2e-12 seq30245 86.0 5e-12 >seq79045 Length=6779 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||||||||| || | | || | || | || || || || || |||||||| ||| Sbjct 3429 ATACCGCCACGCAGACGGAGGACGAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCG 3488 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| || || || || || |||||| ||||||| ||||| ||||||||| Sbjct 3489 GCCAGGGTACGACCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGA 3548 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| ||||| || || | | |||| |||||| | ||| ||| Sbjct 3549 GGAATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCAATGGTGTCCGAGGACTCG 3608 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || |||||||||||||| || || || |||||||| Sbjct 3609 ACCTCGAGCGTAATGGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 3658 >seq69527 Length=538 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || || || || ||||| || || || Sbjct 522 GTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCAAGCTGCTTGCCG 463 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||| ||||| ||||||||||| || || || ||||| ||||| || || Sbjct 462 GCGAAGATGAGGCGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTTCTGCTTC 403 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||||| || ||||| || | || | ||| || || || || || Sbjct 402 ACGTTCTCGATCGTGTCGGACGACTCGACCTCGAGCGTAATCGTCTTACCCGTAAGGGTC 343 Query 114366 TTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 342 TTGACGAAGATCTGCATG 325 >seq24034 Length=175 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 114228 TCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTG 114287 || || || || || |||||| ||||||||||||| |||||||| || ||||| || ||| Sbjct 162 TCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTG 103 Query 114288 TCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACC 114347 || ||||| || || | | || | ||| ||| |||| ||||| || | || | Sbjct 102 TCCTGGATCTTCTGCTTCACGTTCTCGATGGTATCGCTGGACTCGACCTCGAGCGTAATA 43 Query 114348 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || || ||||| || || || || |||||||| Sbjct 42 GTCTTACCAGTCAGGGTCTTGACGAAGATCTGCAT 8 >seq28013 Length=187 Score = 87.8 bits (96), Expect = 2e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 114195 TTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATG 114254 || || |||||||| ||| || ||||| || || || || || || ||| ||||| Sbjct 2 TTCTGGATGTTGTAGTCGGCCAAGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATG 61 Query 114255 AGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCA 114314 |||||||| |||||||| || || || || ||||| ||||| || || | | || Sbjct 62 AGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCG 121 Query 114315 ACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 114374 | ||||||| | || ||||| || | || | ||| || || || || || || || || Sbjct 122 ATGGTGTCGCTCGACTCGACCTCGAGCGTGATCGTCTTACCCGTAAGGGTCTTGACGAAG 181 Query 114375 ATCTGC 114380 |||||| Sbjct 182 ATCTGC 187 >seq30245 Length=127 Score = 86.0 bits (94), Expect = 5e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 114254 GAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTC 114313 ||||||||| |||||||| |||||||| || ||||| |||||||| || | | || Sbjct 1 GAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTTTGCTTCACGTTCTC 60 Query 114314 AACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 114373 | ||||| | ||| ||||| || | || | || |||||||||||||| || || || Sbjct 61 GATCGTGTCCGAGGACTCGACCTCGAGCGTAATGGTCTTGCCGGTCAGAGTCTTGACGAA 120 Query 114374 AATCTGC 114380 |||||| Sbjct 121 GATCTGC 127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419729643569376