Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq78417 96.9 3e-15 seq66934 91.5 1e-13 seq76656 84.2 2e-11 seq79045 82.4 6e-11 seq78127 82.4 6e-11 seq69527 82.4 6e-11 >seq78417 Length=4549 Score = 96.9 bits (106), Expect = 3e-15 Identities = 157/224 (70%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 33909 CAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCG 33968 ||| || || || || ||||| || ||||||||| |||||||| || || | || Sbjct 1055 CAGGCGGAGGACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCG 1114 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 |||| || | ||||||||||| || || ||||||||||| || ||| | || ||| Sbjct 1115 GCCGTCCTCAAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGGTCGGGCGGGATGCCCTC 1174 Query 34029 TTTGTCCATAATTTTTTGCTTAATGGAACTCACAC-TATCAGTAGATTCGCATTCGACCG 34087 |||||| ||| || ||||| | | |||| | || | || ||| |||| || Sbjct 1175 CTTGTCCTGAATCTTCTGCTTCA-CGTTCTCAATSGTGTCCGAGGACTCGACCTCGAGCG 1233 Query 34088 TTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 | || || || ||||| || || ||||| ||||| |||||| || Sbjct 1234 TAATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATTGTT 1277 >seq66934 Length=1683 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956 ||| || || | ||| || || || || || || || ||||||||| |||||||| || Sbjct 316 GAAGCCACCACGCAGACGAAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTC 257 Query 33957 TGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCAC 34016 |||| || |||| || | |||||||| ||||| || ||||||||||| ||| Sbjct 256 GGCCAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGG 197 Query 34017 CGGCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATT 34075 || | || ||| |||||| || |||||||| | | ||| | |||| | || | Sbjct 196 GGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTCA-CGTTCTCGATGGTATCGCTCGACT 138 Query 34076 CGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || |||| ||| || || || || || || || || || ||||| ||||| Sbjct 137 CGACCTCGAGCGTAATAGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 86 >seq76656 Length=3208 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/197 (70%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 33936 CTCCTTCTGAATGTTGTAATCTGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAA 33995 ||||||||| |||||||| || || | || |||| || | |||||||| || || Sbjct 255 CTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGGCCGTCCTCAAGCTGCTTGCCAGCGAA 314 Query 33996 TATCAGGCGCTGCTGATCCACCGGCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGA 34055 || ||||||||||| || ||| | || ||| |||||| ||| || ||||| | | Sbjct 315 GATAAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCA-CGT 373 Query 34056 ACTCACAC-TATCAGTAGATTCGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCA 34114 |||| | || | || ||| |||| ||| || || || ||||| || || |||| Sbjct 374 TCTCAATSGTGTCCGAGGACTCGACCTCGAGCGTAATGGTCTTGCCGGTGAGGGTCTTCA 433 Query 34115 CAAAGATTTGCATTTTT 34131 | ||||| |||||| || Sbjct 434 CGAAGATCTGCATTGTT 450 >seq79045 Length=6779 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| || || || || ||||| || ||||||||| |||||||| || || Sbjct 3431 ACCGCCACGCAGACGGAGGACGAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGC 3490 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || |||| || | |||||||| || || || ||||||||||| ||| || Sbjct 3491 CAGGGTACGACCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGAGG 3550 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGC 34078 | | ||| |||||| || || ||||| | | ||| | | || | || ||| Sbjct 3551 AATACCCTCCTTGTCCTGGATCTTCTGCTTCA-CGTTCTCAATGGTGTCCGAGGACTCGA 3609 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| ||| || || || ||||| || || || || ||||| ||||| Sbjct 3610 CCTCGAGCGTAATGGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 3658 >seq78127 Length=10502 Score = 82.4 bits (90), Expect = 6e-11 Identities = 138/197 (70%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 33936 CTCCTTCTGAATGTTGTAATCTGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAA 33995 ||||||||| |||||||| || || | || |||| || | ||||||||||| || Sbjct 3 CTCCTTCTGGATGTTGTAGTCAGCGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAA 62 Query 33996 TATCAGGCGCTGCTGATCCACCGGCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGA 34055 || ||||||||||| || ||| | || ||| |||||| || || ||||| | | Sbjct 63 GATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGT 121 Query 34056 ACTC-ACACTATCAGTAGATTCGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCA 34114 ||| | | || | || ||| |||| ||| || || || ||||| || || |||| Sbjct 122 TCTCAATGGTGTCCGAGGACTCGACCTCGAGCGTAATAGTCTTGCCGGTGAGGGTCTTCA 181 Query 34115 CAAAGATTTGCATTTTT 34131 | ||||| |||||| || Sbjct 182 CGAAGATCTGCATTGTT 198 >seq69527 Length=538 Score = 82.4 bits (90), Expect = 6e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || ||||||| || || ||| ||||||||| |||||||| || || | || Sbjct 315 AGGCGAAGCACCAAGTGGAGGGTGGACTCCTTCTGNATGTTGTAGTCAGCGAGCGTGCGG 256 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | ||||||||||| || || ||||||||||| || || | || ||| Sbjct 255 CCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGGGATGCCCTCC 196 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCGT 34088 |||||| || |||||||| | | ||| | |||| | || || |||| ||| Sbjct 195 TTGTCCTGGATCTTTTGCTTCA-CGTTCTCGATGGTATCGCTGGACTCAACCTCGAGCGT 137 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || || || || || || || || ||||| ||||| Sbjct 136 AATAGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 98 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396679871076496