Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq71326 122 2e-22 seq77627 93.3 9e-14 seq78850 84.2 5e-11 >seq71326 Length=3810 Score = 122 bits (134), Expect = 2e-22 Identities = 284/425 (67%), Gaps = 4/425 (1%) Strand=Plus/Plus Query 243295 GAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCC 243354 ||||||||| ||| || | || || || || | || ||||| ||||||| || Sbjct 2142 GAGCGTCTCATCGGCTTCGCCGCGGTCGAGGGCATCTTCTTCTCCGGCTCTTTCTGCTCC 2201 Query 243355 ATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATC 243414 ||||| ||||| ||| || ||||||| || || | | |||||| | ||| Sbjct 2202 ATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCCGGTCTTGCCTTCAGCAACGAGCTTATC 2261 Query 243415 AGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTCCAGAAC 243474 || ||||||||||| || ||| | || | | || | || | ||| ||| Sbjct 2262 AGCCGCGACGAGGGTCTGCACTGCGACTTTGCTTGCCTCCTCTACGGCATGCTGGTCAAC 2321 Query 243475 AAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAA 243534 |||| | ||| | ||| || ||| || || || || || | ||| ||||| Sbjct 2322 AAGCCCTCGACCGACGTGCCCAAGCAGATCGTCCTTGAGGCTGTCGAGATCGAGAAGGAG 2381 Query 243535 TTCATTTGCGA--CGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGAC 243592 ||| | || |||| || || | ||||||||||||||| | | |||||| | | Sbjct 2382 TTCGTCACGGAATCGCTGC-CCGTGGCT-CTTATTGGCATGAACGCCAACCTCATGTGCC 2439 Query 243593 AGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACA 243652 |||||||||| ||||| |||||||| || || |||| || || | ||| || |||| Sbjct 2440 AGTACATCGAGTTCGTCGCCGACCGGCTTCTCGTCGCTCTCGGCTGTGACAAGCACTACA 2499 Query 243653 ACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCT 243712 |||| ||||| || | | |||||||| ||||||||| |||| || || ||||||| Sbjct 2500 ACTCATCCAACCCGTTCCCGTGGATGGAGCTTATTTCGCTTGAAGGCAAGACCAACTTCT 2559 Query 243713 TCGAA 243717 ||||| Sbjct 2560 TCGAA 2564 >seq77627 Length=171561 Score = 93.3 bits (102), Expect = 9e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 243561 GCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCAT 243620 ||| || || |||||| | | |||||| | |||||||| || || || |||||||| | Sbjct 138751 GCTCATCGGTATGAACGCGGGCCTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGTCT 138810 Query 243621 TTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGA 243680 || | || ||||| | || ||| |||||| ||| ||||||||| ||| ||||| Sbjct 138811 GCTCGTGGCACTTGGGTGCGACAAACACTACAACGCCACGAACCCCTTCCCCTGGATGGA 138870 Query 243681 GCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGA 243716 ||| || || || | || || || ||||||||||| Sbjct 138871 GCTGATCTCACTCGAGGGCAAGACCAACTTCTTCGA 138906 >seq78850 Length=35994 Score = 84.2 bits (92), Expect = 5e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 297520 GTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGCTTC 297579 ||| ||| |||| || | | ||| || | || ||||||||| || || || || || Sbjct 27917 GTTGTTGGATCCGGCAAAGTTCTGGGCCATGTGGACGATGGTCGAGTGGAGCGAGGCCTC 27976 Query 297580 GCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTCACGTC 297639 ||| ||||| ||||| | ||||| || ||||| ||| | ||| || ||||||| || Sbjct 27977 GCCGTGGTGGTAGGCCGTCTGCTCGGCCACGTAGCCGGCCAGCTGCGCGACCTTCATCTC 28036 Query 297640 GGTCGT-CAAATTGCGCTTGAAAGCTGAATATATCACTTTCCGTTGAGAAGGTTTGAAAC 297698 | ||| || || |||||||| | || | || || || || || |||| | Sbjct 28037 GC-CGTGCAGCTTCCGCTTGAAGCACGCGTAAAGGACCTTGCGCTGGCCCGGCTTGAGGC 28095 Query 297699 CATCAACGACCGACGGAATGCTTCG 297723 |||| ||||||||||||||||| || Sbjct 28096 CATCGACGACCGACGGAATGCTGCG 28120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1101763000378800