Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq79005 291 1e-73 seq77627 134 2e-26 seq68661 127 2e-24 seq73752 91.5 2e-13 seq71326 91.5 2e-13 seq69052 91.5 2e-13 seq66904 91.5 2e-13 >seq79005 Length=17376 Score = 291 bits (322), Expect = 1e-73 Identities = 942/1443 (65%), Gaps = 41/1443 (3%) Strand=Plus/Plus Query 113894 AGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTC 113953 || |||| ||||| || || || || || ||| |||| | | ||||| |||||| Sbjct 124 AGGTGCTCGTTGACGACGGTGAAGTCGCCGGCAAGGATGCGGCGCGTGTAGATGTTGGTC 183 Query 113954 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATG 114013 ||||| |||||||||||||| ||||| || | ||| || | ||| ||||| || |||||| Sbjct 184 GTGTAGGGCTCAAAGCACTCGTTGTTGCCGAGGATCTGCGAGGTCGAGGCAGTCGGCATG 243 Query 114014 GGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCC 114073 || || | ||| || ||| ||||| || | |||| | || | | | Sbjct 244 GGCGCGACGAGCAGCGAGTTGCGGAGGCCGTGGCGGGCAATGTTGGCGCGCAGAGTGGTC 303 Query 114074 CAGTCGTA--GTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGG 114131 ||||| | | | | | | | || ||| | || ||| || | || | | Sbjct 304 CAGTCCCAACGGTCCGACGGGACGACGCC--CCAGAGGTCGGGCTGCAGCTTGCCCTTCG 361 Query 114132 AGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCG---GAGC 114188 |||| ||||| || | |||||||| | |||||| |||| |||| ||| ||| Sbjct 362 AGGCCGGCGAGCCGGGGTAGGTCTCGTAGGTGCCCTCGACCTGGGCCAGCTCGTTCGAG- 420 Query 114189 TCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCA-TTCATTGCCTTGGCC 114247 ||| || || || | || || |||||||| ||| | || || | | |||| Sbjct 421 --GCCACGCAAGCGGCATAGTAGATGGTCTCAAAGATG-GCGCGGTTGAGCTCGCGGGCC 477 Query 114248 TCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCG 114307 |||||| || ||| | | || | || || || || || || || || || || Sbjct 478 TCGTCGCTCTCCCACGGGTGACGCAGGATCATGAAGACGTCGGCCAGGCCCTGCACGCCA 537 Query 114308 AGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC---CACGGGATAAAAA 114364 | ||| || ||||| || | | || || | || || ||| ||| || || | Sbjct 538 ATGCCGATGGGGCGGTGGCGCTGGTTCGAGGTGCGGGC---CTCGGGCACCGGGTAGTAG 594 Query 114365 TTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTT 114424 || | ||||| ||| | || || || |||||||| ||||| | ||| ||||| Sbjct 595 TTGATGTCGATCACCTTGTTGAGGTTCTTGGTGACGACCTTGACCACGTCAAACAGCTTC 654 Query 114425 TCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGA 114484 | || |||||| ||| ||| | ||| |||| || |||||||| || ||||| Sbjct 655 TGGTGATCAAA-CTGGCCGTCGA--CGATGA---ACTTGGGCAGGGCGATCGAGGCCAGG 708 Query 114485 TTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAA 114544 || ||||| | || || ||||||| || | ||||| |||| || || Sbjct 709 TTGCACACGGCCACTTCGTCGGGCGAGGTGTACTGGATGACCTCCGTGCACAGGTTCGAC 768 Query 114545 CTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGC 114604 || || ||||||| || || || || ||||| |||| || || |||||||| ||| Sbjct 769 GACTGGATCGTGCCCAGGTGCTGCTGGTTCGACTTGCTGTTGCAGGCGTCCTTGTAGAGC 828 Query 114605 ATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCGGC- 114663 ||||| ||||| || ||||| | || |||| ||| || || ||||| || ||| Sbjct 829 ATGTAGGGCGTGCCAGTCTCGATCTGCGACTCGAGGATCGCAAACCAGAGCTCCTGGGCC 888 Query 114664 -TGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACT 114722 || | |||| ||| || |||||| |||||| || ||||||||| Sbjct 889 TTGACCACCCGGCG--GGCGCGGCCCTCCAGCTCGTAGCGCTCATACTTCTCTTCAAACT 946 Query 114723 C-TTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGA 114781 | || |||||| || | || || || |||| | ||||||||||| ||||| | Sbjct 947 CCTTGCCCCACGAG-TCAAACAGGCCGGGCGCCTCGTTGGGGCAGAAGAGCGACCAGTCG 1005 Query 114782 CCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCC 114841 || || ||| || ||||||||||||||||| |||||||| || | ||||||| || Sbjct 1006 CCGCCAGACTCGACGCGCTTCATGAAGAGGTCGGGGATCCACAGGCCGTAGAAGAGGTCG 1065 Query 114842 CGACAGCGAGCTTCT--TCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATAT 114899 ||| ||| | |||| || | || || || | |||||||||||| | ||| | Sbjct 1066 CGA--GCGCGGTTCTCCTCCTTGCCGTGGTTCTTCTTGAGCTCCAAAAAGTCAAAGATGT 1123 Query 114900 CCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGA---CGACCAGCCTGGT 114956 | ||||||||||| || || || | || | | ||||| || | || |||||| Sbjct 1124 CGGCGTGCCACGGCTCGAGATAGATGGCAAAGGCGCCCTTGCGCTTGCCGCCGCCCTGGT 1183 Query 114957 TTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGC 115016 || || | || ||| | || | ||||| ||||| || | || ||| | || || Sbjct 1184 CGACGTAGCGGGCGGTGTCGTTGTAGACGCGCAGCATCGGGACGAGACCGTTCGAGGTGC 1243 Query 115017 CATTTGTCCCCCGAAT--ACGAGACTTATTGGCTCTGACATCATGGATGTGCATACCAAT 115074 | || || || ||||| ||||| || ||| | || ||| | || || Sbjct 1244 CGTTGGTGCCGCGAATGTACGAG--TTGGAGGCGCGGATGCGGTGGGCAGCGACGCCGAT 1301 Query 115075 ACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGAT 115134 ||| || || |||| ||||| | ||||||| | |||| || ||||||| || ||||| Sbjct 1302 ACCGCCAGCTGACTTGGAGATGAGGGCGCACTGCTTGAGCGTGTCGTAGATACCCTCGAT 1361 Query 115135 CGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGC 115194 |||||| |||| | | || |||||||| ||| | || || | || || || || Sbjct 1362 CGAGTCCTCCTTCATGGTGAGGAGGAAGCACGACGAAAGCTGCGGGCGGGGGGTGCCGGC 1421 Query 115195 GTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAGGTCTC 115254 |||||||||||| ||||| |||||| |||| | ||| || | | ||||||||||| Sbjct 1422 GTTGAAGAGGGTCGGTGTGGCGTGGGTGAAGAGCTGTTGCGAGAGCAAGTCGTAGGTCTC 1481 Query 115255 CAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTG 115314 | ||||||||| |||| ||| ||||| ||||| | || ||||| | ||||| || Sbjct 1482 GATGACGGCGGGGATGTTGTCCATGTGAAGACCGACGGCAACACGCATGAGCATGTGCTG 1541 Query 115315 GGG 115317 ||| Sbjct 1542 GGG 1544 >seq77627 Length=171561 Score = 134 bits (148), Expect = 2e-26 Identities = 171/233 (73%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 126059 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCC 126118 || || |||||||| ||| |||||| || || |||||| || || ||||||||||| Sbjct 137037 TGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGCGAGGCCGGGCATGAGACCG 136978 Query 126119 CGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACAC 126178 || ||||| | |||||| || | ||| || || |||||||||||||| ||||| || Sbjct 136977 CGTTTCTTGAGCCAGAAGATGGAACAGAAGGAGCCCGAGAAGAAGATACCCTCGACGGCG 136918 Query 126179 GCGAACGCAAAGAGACGCTCAGCAAAGGAG-CGCGA--CTTTGTGTCAAACCACTTCATC 126235 ||||| | | ||||||||| ||||||| | || || || ||| | |||| ||| Sbjct 136917 GCGAATCCGACGAGACGCTCGGCAAAGGTGTCGAGACCCTCCTTGTTGATCCACCGCATT 136858 Query 126236 GCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAG 126288 ||||||| ||||| |||| || | || || |||| ||| || | |||||| Sbjct 136857 GCCCACTCGGCCTTCTTCTTGACCGAGGGCACCGTCTTGATGGCGTTAAAGAG 136805 Score = 84.2 bits (92), Expect = 3e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 115070 CCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCG 115129 || || || || || | ||| ||||| |||||||| |||| | ||||||| ||| Sbjct 145326 CCGATGCCTCCCGCGCTCTTGGAGATGAGCGCGCACCGTTTGAGGGTCTCGTAGATGCCG 145385 Query 115130 TCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTA 115189 ||||| ||||| |||| | | | || ||||| || ||| || || | || || Sbjct 145386 TCGATGGAGTCCTCCTTCATATCCAAGAGAAAGCAACTGCTCATCTGCGGGATGGGCGTG 145445 Query 115190 CCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAG 115249 ||||||||||||||||| || || ||||| |||||| | || ||||| |||||| Sbjct 145446 CCAGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAACAGAAACTGAGACATGAGCTCGTAG 145505 Query 115250 G 115250 | Sbjct 145506 G 145506 >seq68661 Length=10605 Score = 127 bits (140), Expect = 2e-24 Identities = 157/213 (74%), Gaps = 5/213 (2%) Strand=Plus/Plus Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 ||||||||| ||| || |||||||| ||| |||||| || || |||||| || || Sbjct 2250 GGCAAACTCGGCGTGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGCGAGGCC 2309 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165 ||||||||||| || ||||| | |||||| || | ||| || || |||||||||||||| Sbjct 2310 GGGCATGAGACCGCGTTTCTTGAGCCAGAAGATGGAACAGAAGGAGCCCGAGAAGAAGAT 2369 Query 126166 TCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGG----AGCGCGACTTTGTGT 126221 ||||| || || ||| ||| ||| ||||| ||||||| | ||| || ||| Sbjct 2370 GCCCTCGACTGCGGCAAACCCAACGAGGCGCTCGGCAAAGGTGTCAACGC-CCTCCTTGT 2428 Query 126222 CAAACCACTTCATCGCCCACTGCGCCTTTTTCT 126254 | ||| ||||||||||| ||||| |||| Sbjct 2429 TGATCCATCGCATCGCCCACTCGGCCTTCTTCT 2461 >seq73752 Length=9716 Score = 91.5 bits (100), Expect = 2e-13 Identities = 163/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 10960 ACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTC 11019 |||||||||||| || || |||||||||| ||| ||||| || | ||||| | | Sbjct 5959 ACCGACGGCGTCGATCTCGTCGATGAAAATGATGCACGGAGCGTTCTTGCGGGCCTCCGC 5900 Query 11020 AAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGC 11079 ||||| || || || | | | ||||| || || |||||||| | ||| | | | Sbjct 5899 AAAGAGGTCACGCACGCGCGACGGCCCGACGCCGACGAACATTTCGATAAAGTCCGACCC 5840 Query 11080 GGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCT 11138 || | || | || |||||| ||| || || ||||| |||| || || |||||||||| Sbjct 5839 GG-AGATCGAGAAGAAGGGCACGCCGGCCTCGCCCGCTGTGGCCCGCGCCAGGAGGGTCT 5781 Query 11139 TCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGG-ATCCTGGCACC 11190 | ||||| || || ||| |||| || || || | |||| ||| |||| || Sbjct 5780 TGCCCGTGCCGGGCGGCCCGACGAGCAGCGCGCC-CTTGGGAATCTTGGCGCC 5729 >seq71326 Length=3810 Score = 91.5 bits (100), Expect = 2e-13 Identities = 196/289 (68%), Gaps = 7/289 (2%) Strand=Plus/Minus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| ||||||||||| ||| ||| || || || |||| || || Sbjct 2293 GCAAAGTCGCAGTGCAGACCCTCGTCGCGGCTGATAAGCTCGTTGCTGAAGGCAAGACCG 2234 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||| || || |||||||| | |||||| || | || || || || ||||||||||| Sbjct 2233 GGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAAGAGCCGGAGAAGAAGATG 2174 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGA----CTTTGTGTC 126222 ||||| || ||||| | | ||||||||| | |||| | ||| || || Sbjct 2173 CCCTCGACCGCGGCGAAGCCGATGAGACGCTCGGGGAAGG-TCTCGACACCCTCCTTGCA 2115 Query 126223 AAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTC 126282 || ||| ||| ||||||| ||||| |||| | | || || |||| || || Sbjct 2114 AATCCAGCGCATGGCCCACTCGGCCTTCTTCTTCACCGAGGGCACAGTCTCCATGGCCCG 2055 Query 126283 AAAGAGTTCCTTCTTTTCTGAT-GGATCTTTGATGTACTTATCTATGAG 126330 ||||| | | ||| || ||| |||||||| | ||| | || ||||| Sbjct 2054 GAAGAGGTGGTCCTTCTC-GATCGGATCTTTAACGTAGGTGTCGATGAG 2007 >seq69052 Length=9458 Score = 91.5 bits (100), Expect = 2e-13 Identities = 163/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 10960 ACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTC 11019 |||||||||||| || || |||||||||| ||| ||||| || | ||||| | | Sbjct 6062 ACCGACGGCGTCGATCTCGTCGATGAAAATGATGCACGGAGCGTTCTTGCGGGCCTCCGC 6003 Query 11020 AAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGC 11079 ||||| || || || | | | ||||| || || |||||||| | ||| | | | Sbjct 6002 AAAGAGGTCACGCACGCGCGACGGCCCGACGCCGACGAACATTTCGATAAAGTCCGACCC 5943 Query 11080 GGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCT 11138 || | || | || |||||| ||| || || ||||| |||| || || |||||||||| Sbjct 5942 GG-AGATCGAGAAGAAGGGCACGCCGGCCTCGCCCGCTGTGGCCCGCGCCAGGAGGGTCT 5884 Query 11139 TCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGG-ATCCTGGCACC 11190 | ||||| || || ||| |||| || || || | |||| ||| |||| || Sbjct 5883 TGCCCGTGCCGGGCGGCCCGACGAGCAGCGCGCC-CTTGGGAATCTTGGCGCC 5832 >seq66904 Length=9981 Score = 91.5 bits (100), Expect = 2e-13 Identities = 163/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 10960 ACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTC 11019 |||||||||||| || || |||||||||| ||| ||||| || | ||||| | | Sbjct 4023 ACCGACGGCGTCGATCTCGTCGATGAAAATGATGCACGGAGCGTTCTTGCGGGCCTCCGC 4082 Query 11020 AAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGC 11079 ||||| || || || | | | ||||| || || |||||||| | ||| | | | Sbjct 4083 AAAGAGGTCACGCACGCGCGACGGCCCGACGCCGACGAACATTTCGATAAAGTCCGACCC 4142 Query 11080 GGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCT 11138 || | || | || |||||| ||| || || ||||| |||| || || |||||||||| Sbjct 4143 GG-AGATCGAGAAGAAGGGCACGCCGGCCTCGCCCGCTGTGGCCCGCGCCAGGAGGGTCT 4201 Query 11139 TCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGG-ATCCTGGCACC 11190 | ||||| || || ||| |||| || || || | |||| ||| |||| || Sbjct 4202 TGCCCGTGCCGGGCGGCCCGACGAGCAGCGCGCC-CTTGGGAATCTTGGCGCC 4253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596763354907840