Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq79005 378 7e-100 seq77627 178 1e-39 seq68661 123 2e-23 seq4177 84.2 2e-11 >seq79005 Length=17376 Score = 378 bits (418), Expect = 7e-100 Identities = 976/1479 (66%), Gaps = 56/1479 (4%) Strand=Plus/Minus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 ||||| |||||||| |||||||| || ||||| || ||| | || ||||| ||||| Sbjct 1442 GCCACACCGACCCTCTTCAACGCCGGCACCCCCCGCCCGCAGCTTTCGTCGTGCTTCCTC 1383 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 | || | |||| ||||| ||| || || | ||||| |||||| | || || | Sbjct 1382 CTCACCATGAAGGAGGACTCGATCGAGGGTATCTACGACACGCTCAAGCAGTGCGCCCTC 1323 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| || | || || || ||||| || || |||| | | || ||| || Sbjct 1322 ATCTCCAAGTCAGCTGGCGGTATCGGCGTCGCTGCCCACCGCATCCGCGCCTCCAACTCG 1263 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 ||||| ||||| ||||| |||||||| ||||| |||||||| ||||| || |||| |||| Sbjct 1262 TACATTCGCGGCACCAACGGCACCTCGAACGGTCTCGTCCCGATGCTGCGCGTCTACAAC 1203 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 || | || |||||||| |||||||| || || | | | ||||| | || || ||||| Sbjct 1202 GACACCGCCCGCTACGTCGACCAGGGCGGCGGCAAGCGCAAGGGCGCCTTTGCCATCTAT 1143 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 |||||||| |||||||| ||| | | || | || || |||||||||||||| Sbjct 1142 CTCGAGCCGTGGCACGCCGACATCTTTGACTTTTTGGAGCTCAAGAAGAACCACGGCAAG 1083 Query 94252 GATCTGGAGA---GGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATG 94308 || ||||| | || | ||||||||||||| || ||| | || ||||| || ||| Sbjct 1082 GA---GGAGAACCGCGCTCGCGACCTCTTCTACGGCCTGTGGATCCCCGACCTCTTCATG 1026 Query 94309 AAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTG 94368 || ||||||||| | || |||| || || || ||||| || ||||| ||| Sbjct 1025 AAGCGCGTCGAGTCTGGCGGCGACTGGTCGCTCTTCTGCCCCAACGAGGCGCCCGGCCTG 966 Query 94369 TCCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAG 94428 | ||| || || | |||||||| ||||| || ||||| | ||||| Sbjct 965 TTTGACTCGTGGGGCAAGGAGTTTGAAGAGAAGTATGAGCGCTACGAGCTGGAGGGCCGC 906 Query 94429 GCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAG 94488 ||| | ||| | | || | |||| ||| | |||| | || ||| | ||| Sbjct 905 GCCCGCCGGGTGGTCAAGGCCCAGGAGCTCTGGTTTGCGATCCTCGAGTCGCAGATCGAG 846 Query 94489 ACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCAC 94548 || || ||||||||||| | | ||||||| | |||| |||||| |||||||||||| Sbjct 845 ACTGGCACGCCCTACATGCTCTACAAGGACGCCTGCAACAGCAAGTCGAACCAGCAGCAC 786 Query 94549 CTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGAC 94608 || || |||| || ||||| |||||||| ||| | || |||| || || || ||| Sbjct 785 CTGGGCACGATCCAGTCGTCGAACCTGTGCACGGAGGTCATCCAGTACACCTCGCCCGAC 726 Query 94609 GAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTAC 94668 || | || ||||| ||||||| ||| ||| |||| ||| ||| | Sbjct 725 GAAGTGGCCGTGTGCAACCTGGCCTCGATCGCCCTGCCCAAGTTCAT------------- 679 Query 94669 ACGTCTACTGCTTCGTTCGATCTGGAGGAGCT-TGTGAACTTCGCGGGAAGGATGGT--- 94724 |||| || || ||| |||| || |||| | ||| || || | | | || Sbjct 678 -CGTCGACGGC-CAGTTTGATCACCAGAAGCTGTTTGA----CGTGGTCAAGGTCGTCAC 625 Query 94725 CTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTC 94784 | |||||| |||| ||| ||||||| |||| |||||| || || ||||| | ||| Sbjct 624 CAAGAACCTCAACAAGGTGATCGACATCAACTACTACCCGGTGCCCGAGGCCCGCACCTC 565 Query 94785 AAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGAT 94844 |||| | || || ||||||||||| ||||| ||||| | || |||| | |||| Sbjct 564 GAACCAGCGCCACCGCCCCATCGGCATTGGCGTGCAGGGCCTGGCCGACGTCTTCATGAT 505 Query 94845 GATGCGTCTGCCCTACGACTCTGTCGACG-CGGCGGGTTTGAATTTGAACATATTCGAAA 94903 |||||| || | || | ||| | | ||| | | || ||| || || | Sbjct 504 CCTGCGTCACCCGTGGGAGAGCGACGAGGCCCGCGAG-CTCAACCGCGCCATCTTTGAGA 446 Query 94904 GCATTTA---------TTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACG 94954 ||| || || || |||| ||| || || | |||| || || | Sbjct 445 CCATCTACTATGCCGCTTGCGTGGCCTCGAA------CG--AGCTGGCCCAGGTC-GAGG 395 Query 94955 GCGGGCCACACGAATCGTTCCGCGGATCGCC--CTTGGAACAGGGCATTTTTCAGTTCGA 95012 || | |||| | | || ||| ||||| | | || |||||| | ||| ||| Sbjct 394 GC---ACCTACGAGACCTACCCCGGCTCGCCGGCCTCGA--AGGGCAAGCTGCAGCCCGA 340 Query 95013 CCTCTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTAT 95072 ||||||||| || || |||| | | |||||| |||| ||||| | || Sbjct 339 CCTCTGGGGCGTCGTCCCGTCGGACCGTTGGGACTGGACCACTCTGCGCGCCAACATTGC 280 Query 95073 CAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCA 95132 | ||||| | ||| ||||||| || || |||||||| || ||||| || |||| Sbjct 279 CCGCCACGGCCTCCGCAACTCGCTGCTCGTCGCGCCCATGCCGACTGCCTCGACCTCGCA 220 Query 95133 GATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGT 95192 |||||| ||||||||||||| || || |||| ||| ||||| | |||| | || | Sbjct 219 GATCCTCGGCAACAACGAGTGCTTTGAGCCCTACACGACCAACATCTACACGCGCCGCAT 160 Query 95193 GCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGG 95252 || ||||| || ||| ||||| ||||| ||||||| | || || || | | || Sbjct 159 CCTTGCCGGCGACTTCACCGTCGTCAACGAGCACCTGTTGCGCGAGCTCCAGCTGCGCGG 100 Query 95253 TGTGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACAT 95312 | ||| || |||||||| | || | | ||||||||| |||||| ||| Sbjct 99 CCTCTGGTCCCCGCAGCTCAAGAACAAGCTCGTCCAGCACAACGGCTCGGTCCAGCGCAT 40 Query 95313 CCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGAC 95351 | | || || || ||||||||| |||||||||||| Sbjct 39 CGACGAGATCCCTGACGACATCAAGAAGCTCTACAAGAC 1 >seq77627 Length=171561 Score = 178 bits (196), Expect = 1e-39 Identities = 313/461 (68%), Gaps = 1/461 (0%) Strand=Plus/Minus Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136 ||||| || | || | ||||| ||||| || |||||||| || || ||| |||||||| Sbjct 144163 CACGGCGTCTACAATTCTCTGCTGGTGGCGCCGATGCCCACCGCTTCGACGTCGCAGATC 144104 Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTC 95196 || || ||| |||| |||||||||||| ||| ||||| | ||||| | |||||| Sbjct 144103 CTCGGTAACTGCGAGGCGTTCGAACCCTACACGACCAACATCTACAAGCGCATCGTGCTC 144044 Query 95197 GCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTG 95256 | || || ||| || ||||| |||||| | || ||||| | | || | Sbjct 144043 GGAGGCGATTTCATGGTGGTCAACCCACACCTCGTGCGCGACCTCATGCAGAGAGGGCTC 143984 Query 95257 TGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCG 95316 ||| || ||| | |||||| | | | ||||||||||| ||| |||| Sbjct 143983 TGGTCCGAGAAGATGAAGAACGCCATCATCGGGAATAACGGCTCCGTGCAGGGCATCGAC 143924 Query 95317 CAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTG 95376 | || ||| | || ||||||| |||||||||||||||||||||||| |||||||||| Sbjct 143923 GAGATCCCGCAAGATCTCAAGGCCCTCTACAAGACCGTGTGGGAGATCTCGCAGCGCGTC 143864 Query 95377 ATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAGAGNNNNNNNNNNNNNNNN 95436 || |||||| || |||| |||| | ||| ||| |||||| Sbjct 143863 ATCATCGACCTAGCCGCCGACCGCTCGGCCTACATTGACCAGAGCCAGTCGCTGAACCTC 143804 Query 95437 NNNATGGCCGAGCCCAGTCGCGGAAAAATAACGTCCATGTTGTTCTACGGGTGGAGAAAG 95496 |||||||| |||| | || | ||||||||| ||||||| ||| | ||| Sbjct 143803 CACATGGCCGATCCCACCTTCCCCAAGCTCACGTCCATGCACTTCTACGCCTGGCGCAAG 143744 Query 95497 GGTCTCAAGACCGGTATGTATTATTTGCGAACC-AGGCCAA 95536 || ||||||||||| ||||| || | || ||| ||||||| Sbjct 143743 GGCCTCAAGACCGGCATGTACTACCTCCGCACCAAGGCCAA 143703 Score = 134 bits (148), Expect = 1e-26 Identities = 301/444 (68%), Gaps = 15/444 (3%) Strand=Plus/Minus Query 93724 TACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTTTCC 93783 ||||||| |||| ||||| |||||||| ||||| |||||||| |||||| | || Sbjct 145642 TACTTTGGATTCAGGACTCTCGAGAAGTCCTACCTGCTCAAGATCGATGGCGTTATCGCC 145583 Query 93784 GAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTC----ACGGCCACGACAT 93839 ||||| || || || |||| |||||||| ||| | |||| || | | | || | Sbjct 145582 GAGCGTCCCCAGCACATGCTCATGCGCGTGGCCGT-GGGAGTCTACAAGGACGGCGGTCT 145524 Query 93840 GCCGAATGTTTTGCGGGCTTTCAGAGA-CATGCGGGACAAGAGGTATACCATGGCCACCC 93898 ||| | || | || || | | ||| |||| | || || ||||||| Sbjct 145523 CCCGGAAGTGCTCCGAGCCTAC-GAGCTCATGTCTCAGTTTCTGTTCACGCACGCCACCC 145465 Query 93899 CGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACGA 93958 ||||||| |||||||| || || || | || |||||| || || || || | Sbjct 145464 CGACCCTCTTCAACGCTGGCACGCCCATCCCGCAGATGAGCAGTTGCTTTCTCTTGGATA 145405 Query 93959 ACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAA 94018 |||| ||||||||| ||| || | ||| | |||||| || ||| |||||| | Sbjct 145404 TGAAGGAGGACTCCATCGACGGCATCTACGAGACCCTCAAACGGTGCGCGCTCATCTCCA 145345 Query 94019 AATACGCGGGGGGAATCGGGAT--CAGTGTCCACGA--CGTACGTGCCAGGGGTTCCTAC 94074 | |||||| || ||||| | | ||| || || || || |||| |||||| Sbjct 145344 AGAGCGCGGGAGGCATCGGCGTGGCCGTGCACAAGATCCGCGCG-GCCA---ACTCCTAC 145289 Query 94075 ATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAAC 94134 || ||||| ||||| || |||||||| |||||| |||| ||||| || |||| |||| || Sbjct 145288 ATTCGCGGCACCAACGGGACCTCCAATGGCCTCATCCCCATGCTGCGCGTCTACAACGAC 145229 Query 94135 GCGGCGCGCTACGTGGACCAGGGT 94158 | || |||||||| || || ||| Sbjct 145228 ACTGCCCGCTACGTCGATCAAGGT 145205 Score = 96.9 bits (106), Expect = 3e-15 Identities = 123/168 (73%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 94156 GGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTG 94215 || ||||| | | | ||||| | |||||| |||| || ||||||||||| ||||| | Sbjct 145137 GGCGGTGGAAAGCGAAAGGGAGCCTTCGCGATCTACCTGGAGCCCTGGCATTCGGACATC 145078 Query 94216 CAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGA---GGGCCAGAGAC 94272 | ||| |||| || |||||||||||||| || ||||| | || | ||| Sbjct 145077 TTTGAGTTCCTCGATCTCAAGAAGAACCACGGCAAGGA---GGAGAACCGCGCTCGCGAC 145021 Query 94273 CTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAG 94320 ||||||||||| || ||||| || || || || ||||| ||||||||| Sbjct 145020 CTCTTCTACGCCCTGTGGGTCCCGGATCTATTCATGAAGCGCGTCGAG 144973 >seq68661 Length=10605 Score = 123 bits (136), Expect = 2e-23 Identities = 172/246 (70%), Gaps = 1/246 (0%) Strand=Plus/Plus Query 95292 CAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGAC 95351 |||||||||||| ||||||||| | || || |||| ||||||| ||||||||||| Sbjct 903 CAACGGCTCCGTGCAGAACATCGACAAGATCCCTCCGGACCTCAAGGCCCTCTACAAGAC 962 Query 95352 CGTGTGGGAGATCCCGCAGCGCGTGATACTCGACCACGCGGCCGCCCGCGGGCCCTTCAT 95411 ||||||||||||| | |||||||| || ||||| || |||| |||| | ||| ||| Sbjct 963 CGTGTGGGAGATCTCACAGCGCGTCATCATCGACATGGCTGCCGACCGCTCGGCCTACAT 1022 Query 95412 CTGCCAGAGNNNNNNNNNNNNNNNNNNNATGGCCGAGCCCAGTCGCGGAAAAATAACGTC 95471 | |||||| |||||||| |||| | || | ||||| Sbjct 1023 CGACCAGAGCCAGTCGCTCAACCTCCACATGGCCGACCCCACCTTCCCCAAGCTGACGTC 1082 Query 95472 CATGTTGTTCTACGGGTGGAGAAAGGGTCTCAAGACCGGTATGTATTATTTGCGAACC-A 95530 ||| ||||||| ||| | ||||| ||||||||||| ||||| || | || ||| | Sbjct 1083 AATGCACTTCTACGCTTGGCGCAAGGGCCTCAAGACCGGCATGTACTACCTCCGCACCAA 1142 Query 95531 GGCCAA 95536 |||||| Sbjct 1143 GGCCAA 1148 >seq4177 Length=147 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 94108 GTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGG 94167 ||||| ||||| || |||| |||| || | || |||||||| |||||||| || || | | Sbjct 1 GTCCCGATGCTGCGCGTCTACAACGACACTGCCCGCTACGTCGACCAGGGCGGCGGCAAG 60 Query 94168 AGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATC 94227 | ||||| | || || |||| |||||||| |||||||| ||| | | || | Sbjct 61 CGCAAGGGCGCCTTTGCCATCTACCTCGAGCCGTGGCACGCCGACATCTTTGACTTTTTG 120 Query 94228 GACCTGCGAAAGAACCACGGCAACGA 94253 || || |||||||||||||| || Sbjct 121 GAGCTCAAGAAGAACCACGGCAAGGA 146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494234364006080