Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq79005 125 6e-24 seq79045 93.3 4e-14 seq77962 93.3 4e-14 seq30245 86.0 6e-12 seq76656 82.4 7e-11 >seq79005 Length=17376 Score = 125 bits (138), Expect = 6e-24 Identities = 570/886 (64%), Gaps = 31/886 (3%) Strand=Plus/Minus Query 122889 ATCGAGGAAAAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTG 122948 ||||| || ||| ||| ||| || || || ||||||||||| || || | || | Sbjct 1568 ATCGACGACAAGATCGTCGAGCGCCCCCAGCACATGCTCATGCGTGTTGCCGTCGGTCTT 1509 Query 122949 CAC--GGACGCGACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTT 123006 ||| |||| ||||| || | ||| || ||||| ||| | || ||| | | | Sbjct 1508 CACATGGACA--ACATCCCCGCCGTCATCGAGACCTACGACTTGCTCTCGCAACAGCTCT 1451 Query 123007 TCACGCACGCGAGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGT 123066 |||| ||||| | || || | ||| ||||||||| || ||| | || |||| Sbjct 1450 TCACCCACGCCACACCGACCCTCTTCAACGCCGGCACCCCCCGCCCGCAGCTTTCGTCGT 1391 Query 123067 GTTTTTTGCTCACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATT 123126 | || | |||||| || || ||| ||| |||||||| || || | | | Sbjct 1390 GCTTCCTCCTCACCATGAAGGAGGACTCGATCGAGGGTATCTACGACACGCTCAAGCAGT 1331 Query 123127 GCGCGTTGATTTCCAAATTTGGCGGCGGCATAGGCGTGAACG-TGCACGACGTAAGAG-G 123184 |||| | || ||||| | | ||||| || ||||| || ||| | || | | | Sbjct 1330 GCGCCCTCATCTCCAAGTCAGCTGGCGGTATCGGCGT---CGCTGCCCACCGCATCCGCG 1274 Query 123185 CCGCGGAAGCCG--CATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTG 123242 || | || || ||| | ||||| |||| | | | ||| |||| | |||||| Sbjct 1273 CCTCC-AACTCGTACATTCGCGGCACCAACGGCACCTCGAACGGTCTCGTCCCGATGCTG 1215 Query 123243 CGAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGGCGGC---AAACGCAAAGGCGCG 123299 || || ||||| || ||| || ||||||||||||||||| || ||||| ||||| Sbjct 1214 CGCGTCTACAACGACACCGCCCGCTACGTCGACCAGGGCGGCGGCAAGCGCAAGGGCGCC 1155 Query 123300 ATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGC 123359 | || |||||||| || |||||||||| || | | || ||||| | | || Sbjct 1154 TTTGCCATCTATCTCGAGCCGTGGCACGCCGACATCTTTGACTTTTTGGAGCTCAAGAAG 1095 Query 123360 AACATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGAT 123419 ||| || ||| || || || ||||| | || |||| | ||| | ||||| Sbjct 1094 AACCACGGCAAGGAGGAGAACCGCGCTCGCGACCTCTTCTACGGCCTGTGGATCCCCGAC 1035 Query 123420 TTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGT 123479 | || ||| ||||| | | ||||| ||||||||| | || ||| | | Sbjct 1034 CTCTTCATGAAGCGCGTCGAGTCTGGCGGCGACTGGTCGCTCTTCTGCCCCAACGAGGCG 975 Query 123480 CCCGGCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGC 123539 |||||| || ||| | ||||| ||||||| ||| ||| | || ||||||| Sbjct 974 CCCGGCCTGTTTGACTCGTGGGGCAAGGAGTTTGAAGAGAAGTATGAGCGCTACGAGCTG 915 Query 123540 GAAGGCAAACAGGTTAGTCAGGT--TCC-GGCACGTGATTTGTTCAAATTT---ATTATC 123593 || ||| | | | | ||| || ||| | || | || ||| || || Sbjct 914 GAGGGC---CGCGCCCGCCGGGTGGTCAAGGCCCAGGA---GCTCTGGTTTGCGATCCTC 861 Query 123594 GAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAA 123653 || | || |||| || || ||||| |||||||||||||| |||||||||||||| || Sbjct 860 GAGTCGCAGATCGAGACTGGCACGCCCTACATGCTCTACAAGGACGCCTGCAACAGCAAG 801 Query 123654 ACCAATCAG-AGCAACTTGGGAACAATAAAAT-GTAGTAATCTTTGCTCCGAAATTATCG 123711 | || ||| ||| || |||| || || | | || | || || ||| | || | ||| Sbjct 800 TCGAACCAGCAGC-ACCTGGGCACGATCCAGTCGTCG-AACCTGTGCACGGAGGTCATCC 743 Query 123712 AATACAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGAT 123757 | |||| | |||| ||||||||||||| || |||| ||||| Sbjct 742 AGTACACCTCGCCCGACGAAGTGGCCGTGTGCAACCTGGCCTCGAT 697 >seq79045 Length=6779 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || || || ||||| ||||| || || ||| | ||| | || || Sbjct 3450 ACGAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGACCGTCCTCG 3509 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || || || ||| | || | || ||||||||||| ||||| || || || || || Sbjct 3510 AGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGG 3569 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || || || | || | || | |||||| || |||||||| ||||| |||| || || Sbjct 3570 ATCTTCTGCTTCA-CGTTCTCAATGGTGTCCGAGGACTCGACCTCGAGCGTAATGGTCTT 3628 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 |||||| ||||| || || || || ||||| ||| || Sbjct 3629 GCCGGTCAGAGTCTTGACGAAGATCTGCATACCGCCAC 3666 Score = 86.0 bits (94), Expect = 6e-12 Identities = 162/236 (69%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || |||||||| | | || || || || || || ||||| ||||| || || ||| Sbjct 3204 CCGCCGCGGAGACGAAGGACGAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCC 3263 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| || || | || || || ||| | || | || ||||||||||| || Sbjct 3264 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGGGGG 3323 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || || || || || || || | || | || | |||||||| ||||| || Sbjct 3324 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGTTCTCGATCGTGTCGGACGACTCTAC 3382 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 ||||| |||| ||| || || || || ||||| || || || ||||| ||| || Sbjct 3383 CTCGAGCGTAATCGTCTTACCCGTAAGGGTTTTCACGAAGATCTGCATACCGCCAC 3438 >seq77962 Length=8127 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || ||||| || | | || || || || || |||||||| ||||| || || ||| Sbjct 6862 CCGCCGCGCAGGCGAAGGACGAGGTGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGCC 6803 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| || || | || || || ||| | || | || ||||||||||| ||| Sbjct 6802 AGGGTACGGCCGTCCTCAAGCTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCCGGGGGA 6743 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || || || ||||| ||||| || || || | || | || | |||||| || |||||||| Sbjct 6742 ATACCCTCCTTATCCTGAATCTTCTGCTTCA-CGTTCTCGATGGTGTCCGACGACTCGAC 6684 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||||| || || || || | || || || || |||||||| Sbjct 6683 CTCGAGAGTAATAGTCTTACCCGTCAAGGTCTTGACGAAGATTTGCAT 6636 >seq30245 Length=127 Score = 86.0 bits (94), Expect = 6e-12 Identities = 95/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 45216 CGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTAC 45274 || ||||||||||| |||||||| || || || || || ||||| || | || | || | Sbjct 5 CGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTTTGCTTCA-CGTTCTCGAT 63 Query 45275 GGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAAT 45334 ||||| || |||||||| ||||| |||| || |||||||| ||||| || || || || Sbjct 64 CGTGTCCGAGGACTCGACCTCGAGCGTAATGGTCTTGCCGGTCAGAGTCTTGACGAAGAT 123 Query 45335 TTGC 45338 ||| Sbjct 124 CTGC 127 >seq76656 Length=3208 Score = 82.4 bits (90), Expect = 7e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 45216 CGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACG 45275 || |||||||||||||| ||||| || || || || || || || |||| || | | Sbjct 2 CGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTGACATTCTCGATG 61 Query 45276 GTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATT 45335 |||||| |||||||| ||||| |||| || ||||| || ||||| || || || || Sbjct 62 GTGTCGCTCGACTCGACCTCGAGCGTAATGGTCTTGCCAGTCAGAGTCTTGACGAAGATC 121 Query 45336 TGCATCGCGCGAC 45348 ||||| ||| || Sbjct 122 TGCATACCGCCAC 134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451556575638080