Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq79005 297 2e-75 seq77627 131 2e-25 seq68661 122 1e-22 seq71326 98.7 1e-15 seq73752 91.5 2e-13 seq69052 91.5 2e-13 seq66904 91.5 2e-13 seq78850 87.8 2e-12 >seq79005 Length=17376 Score = 297 bits (328), Expect = 2e-75 Identities = 963/1475 (65%), Gaps = 39/1475 (3%) Strand=Plus/Plus Query 115822 GACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACTCA 115881 |||||||| || | || ||| || || ||||||| ||||| || || || Sbjct 91 GACCAGAGGCCGCGCAGCTGGAGCTCGCGCAACAGGTGCTCGTTGACGACGGTGAAGTCG 150 Query 115882 CCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTA 115941 || || ||| |||| | | ||||||||||||||||| |||||||||||||| ||||| Sbjct 151 CCGGCAAGGATGCGGCGCGTGTAGATGTTGGTCGTGTAGGGCTCAAAGCACTCGTTGTTG 210 Query 115942 CCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGA 116001 || | ||| || | || ||||| || |||||||| || | ||| || ||||||||| Sbjct 211 CCGAGGATCTGCGAGGTCGAGGCAGTCGGCATGGGCGCGACGAGCAGCGAGTTGCGGAGG 270 Query 116002 CCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCC 116061 || | |||| | || | | |||||| | | | | | | Sbjct 271 CCGTGGCGGGCAATGTTGGCGCGCAGAGTGGTCCAGTCCCAACGGTCCGACGGGACGACG 330 Query 116062 TCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATAT 116121 |||| | || ||| || | || | || || ||||| || | ||||| || Sbjct 331 CCCCAGAGGTCGGGCTGCAGCTTGCCCTTCGAGGCCGGCGAGCCGGGGTAGGTCTCGTAG 390 Query 116122 GGGCCCTCAACCTCCGCCAATTCG---GAGCTCGCCTCGAGGGCTGCGTGATACATTGTC 116178 | |||||| |||| |||| ||| ||| ||| || || || | || || ||| Sbjct 391 GTGCCCTCGACCTGGGCCAGCTCGTTCGAG---GCCACGCAAGCGGCATAGTAGATGGTC 447 Query 116179 TCAAAAATGCGAGCA-TTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAA 116237 ||||| ||| | || || | | |||||||||| || ||| | |||| | Sbjct 448 TCAAAGATG-GCGCGGTTGAGCTCGCGGGCCTCGTCGCTCTCCCACGGGTGACGCAGGAT 506 Query 116238 AATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGA 116297 || || || || || || || || || || | ||| || ||||| || | | || || Sbjct 507 CATGAAGACGTCGGCCAGGCCCTGCACGCCAATGCCGATGGGGCGGTGGCGCTGGTTCGA 566 Query 116298 CTTTCGAGCGGTCTC---CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTT 116354 | || || ||| ||| || || | || | ||||| ||| | || || || || Sbjct 567 GGTGCGGGC---CTCGGGCACCGGGTAGTAGTTGATGTCGATCACCTTGTTGAGGTTCTT 623 Query 116355 GGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATT 116414 |||||| ||||| | ||| ||||| | || |||||| ||| ||| | | Sbjct 624 GGTGACGACCTTGACCACGTCAAACAGCTTCTGGTGATCAAA-CTGGCCGTCGA--CGAT 680 Query 116415 GACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGT 116474 || |||| || |||||||| || ||||| || ||||| | || || || Sbjct 681 GA---ACTTGGGCAGGGCGATCGAGGCCAGGTTGCACACGGCCACTTCGTCGGGCGAGGT 737 Query 116475 GTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATT 116534 ||||| || | ||||| |||| || || || || ||||||| || || || || Sbjct 738 GTACTGGATGACCTCCGTGCACAGGTTCGACGACTGGATCGTGCCCAGGTGCTGCTGGTT 797 Query 116535 TGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGA 116594 ||||| |||| || || |||||||||||||| || ||||| || ||||| | || || Sbjct 798 CGACTTGCTGTTGCAGGCGTCCTTGTAGAGCATGTAGGGCGTGCCAGTCTCGATCTGCGA 857 Query 116595 CTTGAGAATAGCCTTCCATACATCGGCGGC--TGGCACAGTGGCGTTGGCTCGCCCCTCC 116652 || ||| || || ||| | || ||| || | |||| ||| || |||||| Sbjct 858 CTCGAGGATCGCAAACCAGAGCTCCTGGGCCTTGACCACCCGGCG--GGCGCGGCCCTCC 915 Query 116653 TCCTCGTACTTTGTGTAGAGGGCCTCAAACTC-TTCACCCACAGCCTCTGAGAGCCCTGG 116711 |||||| || | |||||||| || ||||| | || | || || || Sbjct 916 AGCTCGTAGCGCTCATACTTCTCTTCAAACTCCTTGCCCCAC-GAGTCAAACAGGCCGGG 974 Query 116712 TGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAG 116771 |||| | || |||||||| ||||| | || || ||| || |||||||||||||| Sbjct 975 CGCCTCGTTGGGGCAGAAGAGCGACCAGTCGCCGCCAGACTCGACGCGCTTCATGAAGAG 1034 Query 116772 GTCTGGGATCCAGAGCGCCG-AGAAGAGATCCCGACAGCGAGCTTCT--TCATCCCCCTG 116828 ||| |||||||| || |||| ||||||| || ||| ||| | |||| || | || || Sbjct 1035 GTCGGGGATCCACAG-GCCGTAGAAGAGGTCGCGA--GCGCGGTTCTCCTCCTTGCCGTG 1091 Query 116829 ATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGC 116888 || | |||||||||||| | ||| || ||||||||||| || || || | || Sbjct 1092 GTTCTTCTTGAGCTCCAAAAAGTCAAAGATGTCGGCGTGCCACGGCTCGAGATAGATGGC 1151 Query 116889 GATTGACCCCTTGCGA---CGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATAC 116945 | | |||||||| | || |||||| || || | || || |||| | || Sbjct 1152 AAAGGCGCCCTTGCGCTTGCCGCCGCCCTGGTCGACGTAGCGGGCGGTGTCGTTGTAGAC 1211 Query 116946 GCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAAT--ACGAGACTTG 117003 ||| ||||| || | || ||| | || ||| || || || ||||| ||||| ||| Sbjct 1212 GCGCAGCATCGGGACGAGACCGTTCGAGGTGCCGTTGGTGCCGCGAATGTACGAG--TTG 1269 Query 117004 TTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCG 117063 ||| | || |||| | || ||||| || || |||| ||||| | ||| Sbjct 1270 GAGGCGCGGATGCGGTGGGCAGCGACGCCGATACCGCCAGCTGACTTGGAGATGAGGGCG 1329 Query 117064 CACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAG 117123 |||| | |||| || ||||||| || ||||||||||| |||| | | || ||||||| Sbjct 1330 CACTGCTTGAGCGTGTCGTAGATACCCTCGATCGAGTCCTCCTTCATGGTGAGGAGGAAG 1389 Query 117124 CAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATG 117183 || ||| | || || | || || || |||||||||||||| ||||| |||||| || Sbjct 1390 CACGACGAAAGCTGCGGGCGGGGGGTGCCGGCGTTGAAGAGGGTCGGTGTGGCGTGGGTG 1449 Query 117184 AACATACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGA 117243 || | ||| || | | ||||||||||| | ||| | ||| |||| ||| |||| Sbjct 1450 AAGAGCTGTTGCGAGAGCAAGTCGTAGGTCTCGATGACGGCGGGGATGTTGTCCATGTGA 1509 Query 117244 ATACCGATTGAGACCCGCATAAACATGTATTGGGG 117278 | ||||| | || ||||| | ||||| ||||| Sbjct 1510 AGACCGACGGCAACACGCATGAGCATGTGCTGGGG 1544 >seq77627 Length=171561 Score = 131 bits (144), Expect = 2e-25 Identities = 170/233 (73%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 127532 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 127591 || || |||||||| ||| |||||| || || |||||| || || ||||||||||| Sbjct 137037 TGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGCGAGGCCGGGCATGAGACCG 136978 Query 127592 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 127651 || ||||| | |||||| || | ||| || ||||| ||||||||||| ||||| || Sbjct 136977 CGTTTCTTGAGCCAGAAGATGGAACAGAAGGAGCCCGAGAAGAAGATACCCTCGACGGCG 136918 Query 127652 GCGAACGCAAATAGACGCTCGGCAAAGGAG-CGGGA--CTTTGTATCAAACCACTTCATC 127708 ||||| | | |||||||||||||||| | || || || | | | |||| ||| Sbjct 136917 GCGAATCCGACGAGACGCTCGGCAAAGGTGTCGAGACCCTCCTTGTTGATCCACCGCATT 136858 Query 127709 GCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAG 127761 ||||||| ||||| |||| || | || || |||| ||| || | |||||| Sbjct 136857 GCCCACTCGGCCTTCTTCTTGACCGAGGGCACCGTCTTGATGGCGTTAAAGAG 136805 Score = 84.2 bits (92), Expect = 3e-11 Identities = 184/276 (67%), Gaps = 0/276 (0%) Strand=Plus/Plus Query 116936 CGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATAC 116995 |||| | ||||| ||||| || |||| |||| || || || || || ||||| Sbjct 145231 CGTTGTAGACGCGCAGCATGGGGATGAGGCCATTGGAGGTCCCGTTGGTGCCGCGAATGT 145290 Query 116996 GAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGA 117055 || ||| || | || | ||| | | || || || || || || | ||| |||| Sbjct 145291 AGGAGTTGGCCGCGCGGATCTTGTGCACGGCCACGCCGATGCCTCCCGCGCTCTTGGAGA 145350 Query 117056 TTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGA 117115 | | |||||| |||| | ||||||| || ||||| ||||| |||| | | | Sbjct 145351 TGAGCGCGCACCGTTTGAGGGTCTCGTAGATGCCGTCGATGGAGTCCTCCTTCATATCCA 145410 Query 117116 TGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCG 117175 ||| ||||| || ||| || || | || || ||||||||||||||||| || || | Sbjct 145411 AGAGAAAGCAACTGCTCATCTGCGGGATGGGCGTGCCAGCGTTGAAGAGGGTCGGGGTGG 145470 Query 117176 CGTGGATGAACATACCTTGGGACATCTTATCGTAGG 117211 |||| |||||| | || ||||| ||||||| Sbjct 145471 CGTGCGTGAACAGAAACTGAGACATGAGCTCGTAGG 145506 >seq68661 Length=10605 Score = 122 bits (134), Expect = 1e-22 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 |||||||| ||| || |||||||| ||| |||||| || || |||||| || || Sbjct 2251 GCAAACTCGGCGTGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGCGAGGCCG 2310 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||||||||| || ||||| | |||||| || | ||| || ||||| ||||||||||| Sbjct 2311 GGCATGAGACCGCGTTTCTTGAGCCAGAAGATGGAACAGAAGGAGCCCGAGAAGAAGATG 2370 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGG 127679 ||||| || || ||| ||| || ||||||||||||| Sbjct 2371 CCCTCGACTGCGGCAAACCCAACGAGGCGCTCGGCAAAGG 2410 >seq71326 Length=3810 Score = 98.7 bits (108), Expect = 1e-15 Identities = 199/289 (69%), Gaps = 5/289 (2%) Strand=Plus/Minus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || ||| ||||||||||| ||| ||| || || || |||| ||||| Sbjct 2294 AGCAAAGTCGCAGTGCAGACCCTCGTCGCGGCTGATAAGCTCGTTGCTGAAGGCAAGACC 2235 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 ||||| || || |||||||| | |||||| || | || || ||||| ||||||||||| Sbjct 2234 GGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAAGAGCCGGAGAAGAAGAT 2175 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGG-AGCGGGA-CTTTGTATCA 127696 ||||| || ||||| | | |||||||||| |||| || | | | | || Sbjct 2174 GCCCTCGACCGCGGCGAAGCCGATGAGACGCTCGGGGAAGGTCTCGACACCCTCCTTGCA 2115 Query 127697 AA-CCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTC 127755 || ||| ||| ||||||| ||||| |||| | | || || |||| || || Sbjct 2114 AATCCAGCGCATGGCCCACTCGGCCTTCTTCTTCACCGAGGGCACAGTCTCCATGGCCCG 2055 Query 127756 AAAGAGTTCCTTCTTTTCTGAT-GGATCTTTGATGTACTTATCTATGAG 127803 ||||| | | ||| || ||| |||||||| | ||| | || ||||| Sbjct 2054 GAAGAGGTGGTCCTTCTC-GATCGGATCTTTAACGTAGGTGTCGATGAG 2007 >seq73752 Length=9716 Score = 91.5 bits (100), Expect = 2e-13 Identities = 163/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 12875 ACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTC 12934 |||||||||||| || ||||| ||||||| ||| ||||| || | ||||| | | Sbjct 5959 ACCGACGGCGTCGATCTCGTCGATGAAAATGATGCACGGAGCGTTCTTGCGGGCCTCCGC 5900 Query 12935 AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGC 12994 ||||| || ||||| | | | ||||| || || ||||| || | ||| | | | Sbjct 5899 AAAGAGGTCACGCACGCGCGACGGCCCGACGCCGACGAACATTTCGATAAAGTCCGACCC 5840 Query 12995 GGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCT 13053 || | || | || |||||| ||| || || ||||| |||| || || |||||||||| Sbjct 5839 GG-AGATCGAGAAGAAGGGCACGCCGGCCTCGCCCGCTGTGGCCCGCGCCAGGAGGGTCT 5781 Query 13054 TCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGG-ATCCTGGCACC 13105 | ||||| || || ||| |||| || || || | |||| ||| |||| || Sbjct 5780 TGCCCGTGCCGGGCGGCCCGACGAGCAGCGCGCC-CTTGGGAATCTTGGCGCC 5729 >seq69052 Length=9458 Score = 91.5 bits (100), Expect = 2e-13 Identities = 163/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 12875 ACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTC 12934 |||||||||||| || ||||| ||||||| ||| ||||| || | ||||| | | Sbjct 6062 ACCGACGGCGTCGATCTCGTCGATGAAAATGATGCACGGAGCGTTCTTGCGGGCCTCCGC 6003 Query 12935 AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGC 12994 ||||| || ||||| | | | ||||| || || ||||| || | ||| | | | Sbjct 6002 AAAGAGGTCACGCACGCGCGACGGCCCGACGCCGACGAACATTTCGATAAAGTCCGACCC 5943 Query 12995 GGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCT 13053 || | || | || |||||| ||| || || ||||| |||| || || |||||||||| Sbjct 5942 GG-AGATCGAGAAGAAGGGCACGCCGGCCTCGCCCGCTGTGGCCCGCGCCAGGAGGGTCT 5884 Query 13054 TCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGG-ATCCTGGCACC 13105 | ||||| || || ||| |||| || || || | |||| ||| |||| || Sbjct 5883 TGCCCGTGCCGGGCGGCCCGACGAGCAGCGCGCC-CTTGGGAATCTTGGCGCC 5832 >seq66904 Length=9981 Score = 91.5 bits (100), Expect = 2e-13 Identities = 163/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 12875 ACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTC 12934 |||||||||||| || ||||| ||||||| ||| ||||| || | ||||| | | Sbjct 4023 ACCGACGGCGTCGATCTCGTCGATGAAAATGATGCACGGAGCGTTCTTGCGGGCCTCCGC 4082 Query 12935 AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGC 12994 ||||| || ||||| | | | ||||| || || ||||| || | ||| | | | Sbjct 4083 AAAGAGGTCACGCACGCGCGACGGCCCGACGCCGACGAACATTTCGATAAAGTCCGACCC 4142 Query 12995 GGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCT 13053 || | || | || |||||| ||| || || ||||| |||| || || |||||||||| Sbjct 4143 GG-AGATCGAGAAGAAGGGCACGCCGGCCTCGCCCGCTGTGGCCCGCGCCAGGAGGGTCT 4201 Query 13054 TCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGG-ATCCTGGCACC 13105 | ||||| || || ||| |||| || || || | |||| ||| |||| || Sbjct 4202 TGCCCGTGCCGGGCGGCCCGACGAGCAGCGCGCC-CTTGGGAATCTTGGCGCC 4253 >seq78850 Length=35994 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 176032 GAGGGAGACTTCACCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGC 176091 ||| ||| | || ||||| |||||||||| || || ||||| || | |||| |||||| Sbjct 27965 GAGCGAGGCCTCGCCGTGGTGGTAGGCCGTCTGCTCGGCCACGTAGCCGGCCAGCTGCGC 28024 Query 176092 CACCTTCATCTCATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGA 176151 ||||||||||| | | || ||| | ||||||||| || | |||||| | ||| Sbjct 28025 GACCTTCATCTCGCCGTGCAGCTTCCGCTTGAAGCACGCGTAAAGGACCTTGCGCTGGCC 28084 Query 176152 AGGCTTGAGGCCGTCG 176167 ||||||||||| ||| Sbjct 28085 CGGCTTGAGGCCATCG 28100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 612900993535680