Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq77627 163 5e-35 seq79005 134 2e-26 seq68661 134 2e-26 seq76579 132 8e-26 >seq77627 Length=171561 Score = 163 bits (180), Expect = 5e-35 Identities = 305/440 (69%), Gaps = 10/440 (2%) Strand=Plus/Plus Query 203885 AGATAGTACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGT 203944 || ||||||||||||||||| |||||||| |||| |||| | ||||||||| | || Sbjct 143718 AGGTAGTACATGCCGGTCTTGAGGCCCTTGCGCCAGGCGTAGAAGTGCATGGACGTGAGC 143777 Query 203945 TTGCTCACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGC 204004 ||| | | |||| ||||||||||| | |||||| |||||||| ||||| ||| | | | Sbjct 143778 TTGGGGAAGGTGGGATCGGCCATGTGGAGGTTCAGCGACTGGCTCTGGTCAATGTAGGCC 143837 Query 204005 GCCCGATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAAC 204064 | || || ||||| | | ||| ||| |||||| ||||||||||| |||||| | Sbjct 143838 GAGCGGTCGGCGGCTAGGTCGATGATGACGCGCTGCGAGATCTCCCACACGGTCTTGTAG 143897 Query 204065 ACGTCTCTGGTGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCAT 204123 | | | || | ||| || | || | | | | |||| | |||||||| | | || Sbjct 143898 AGGGCCTTGAGATCTTGCGGGATCTCGT-CGATGCCCTGCACGGAGCCGTTATTCCCGAT 143956 Query 204124 CAGTCTCATCCTCGTCTCCTCCCCCCACATGCCCAACCTG-ATCAGCTCCCGCACCAGGT 204182 | || || ||| ||| ||| | |||| ||| || || || ||||| |||| Sbjct 143957 GATGGCGTTCTTCATCTTCTCGGACCAGA-GCCCTCTCTGCATGAGGTCGCGCACGAGGT 144015 Query 204183 GGGGGTTGATGATC-TGAAA--GTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGG 204239 | ||||||| | | ||||| | ||||| ||||| || || | | |||| | | Sbjct 144016 GTGGGTTGACCACCATGAAATCGCCTCCG---AGCACGATGCGCTTGTAGATGTTGGTCG 144072 Query 204240 TGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGG 204299 || | ||||||||||||||| ||| |||| ||||| | || || |||||||| | Sbjct 144073 TGTAGGGTTCGAACGCCTCGCAGTTACCGAGGATCTGCGACGTCGAAGCGGTGGGCATCG 144132 Query 204300 GAGCCAGGAGCAGGGAGTTG 204319 | |||| ||||| || ||| Sbjct 144133 GCGCCACCAGCAGAGAATTG 144152 >seq79005 Length=17376 Score = 134 bits (148), Expect = 2e-26 Identities = 297/438 (68%), Gaps = 8/438 (2%) Strand=Plus/Plus Query 205165 CTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTC 205224 || ||| || |||||| ||||||||||||||| || || || || || | | | || Sbjct 1023 CTTCATGAAGAGGTCGGGGATCCACAGGCCGTAGAAGAGGTCGCGAGCGCGGTTCTCCTC 1082 Query 205225 GTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTA 205283 | || ||||||| || | |||| ||| | | |||||||||||||||||||| | Sbjct 1083 CTTGCCGTGGTTCTTCTTGAGCTCCAAA-AAGTCAAAGATGTCGGCGTGCCACGGCTCGA 1141 Query 205284 ACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCG 205343 | | ||| | ||||| | |||| || |||||||| || ||| | | Sbjct 1142 GATAGATGGCAAAGGCGCCCTTGCGCTTGCCGCCGCCCTGGTCGACGTAGCGGGCGGTGT 1201 Query 205344 CGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGG 205403 ||||| | || ||||||||||| || |||||||| | ||| ||||| |||| | ||| Sbjct 1202 CGTTGTAGACGCGCAGCATCGGGACGAGACCGTTCGAGGTGCCGTTGGTGCCGCGAATGT 1261 Query 205404 CCGAGCCTTCAGCCCTCA--CGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGC 205461 |||| || | | || ||| | || |||| || ||||||| |||||| Sbjct 1262 ACGAGTTGGAGGCGCGGATGCGGTGGGCA--GCGACGCCGATACCGCCAGCTGACTTGGA 1319 Query 205462 GATCTGGGCGCACT-CTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTG 205520 ||| ||||||||| |||| || ||| |||||| || |||| || || ||| || | Sbjct 1320 GATGAGGGCGCACTGCTTG-AGCGTGTCGTAGATACCCTCGATCGAGTCCTCCTTCATGG 1378 Query 205521 TCACCAGATAGCACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGC 205580 | | || ||||||| | |||| | | |||||| |||| |||||| || || Sbjct 1379 TGAGGAGGAAGCACGACGAAAGCTGCGGGCGGGGGGTGCCGGCGTTGAAGAGGGTCGGTG 1438 Query 205581 TGGCGTGGCTGAAGCGCT 205598 |||||||| ||||| ||| Sbjct 1439 TGGCGTGGGTGAAGAGCT 1456 >seq68661 Length=10605 Score = 134 bits (148), Expect = 2e-26 Identities = 136/177 (77%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 203885 AGATAGTACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGT 203944 || ||||||||||||||||| |||||||| |||| |||| | |||||| || | ||| Sbjct 1133 AGGTAGTACATGCCGGTCTTGAGGCCCTTGCGCCAAGCGTAGAAGTGCATTGACGTCAGC 1074 Query 203945 TTGCTCACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGC 204004 ||| | | |||||||||||||||| | ||| || |||||||| ||||||||| | | | Sbjct 1073 TTGGGGAAGGTGGGGTCGGCCATGTGGAGGTTGAGCGACTGGCTCTGGTCGATGTAGGCC 1014 Query 204005 GCCCGATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTG 204061 | || || || ||||| | ||| ||| ||| || ||||||||||| |||||| Sbjct 1013 GAGCGGTCGGCAGCCATGTCGATGATGACGCGCTGTGAGATCTCCCACACGGTCTTG 957 Score = 118 bits (130), Expect = 2e-21 Identities = 230/332 (69%), Gaps = 7/332 (2%) Strand=Plus/Plus Query 159754 GTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAAC 159813 ||| || |||| |||||||| ||||| | | ||| || || | ||| || Sbjct 2082 GTCGGCGGCAAACTCGATGTACTGGCACATGAGGCCTGCGTTCATGCCGATGAGCGCCAC 2141 Query 159814 GGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTG-CG 159872 ||||| | |||| | |||||||||||| |||||||| || ||| || ||||| | Sbjct 2142 CGGGAGTGACTCCGTGACAAACTCCTTCTCGATCTCGACGGCCTCGAGGACGATCTGCCT 2201 Query 159873 AGACACGTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGT 159932 | |||| ||| | ||||||| || || | || | ||| |||||| ||||| | Sbjct 2202 TGGCACG-TCGCTCGACGGCTTGTTCACAA-GCATACCGT--ACAAGAGGCAGGCAAACT 2257 Query 159933 CGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGA 159992 || |||||| |||||||| || ||||| ||||||||| | | |||||| ||||||| Sbjct 2258 CGGCGTGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGCGAGGCCGGGCATGA 2317 Query 159993 TCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCC 160051 || || |||||||| || |||| || ||| | | | | || ||||| ||||| Sbjct 2318 GACCGCGTTTCTTGAGCCAGAAGATGG-AACAGAAGGAGCCCGAGAAGAAGATGCCCTCG 2376 Query 160052 ACGGCCGCAAACGCCACGAGCCTCTCACCAAA 160083 || || |||||| | ||||| | ||| |||| Sbjct 2377 ACTGCGGCAAACCCAACGAGGCGCTCGGCAAA 2408 >seq76579 Length=2215 Score = 132 bits (146), Expect = 8e-26 Identities = 163/220 (74%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 203843 TCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTC 203902 || ||||||||||| || ||||| |||| |||| | | | ||| ||||||||||| ||| Sbjct 257 TCGACCGTGAACTGGATCGCGTTGGCGGCCGGCCGGGTGCGCAGGTAGTACATGCCCGTC 198 Query 203903 TTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAG-TTTGCTCACGTTGGGGTC 203961 || |||||||| |||| |||| | |||||| || | || || || ||| ||| || Sbjct 197 TTGAGGCCCTTGCGCCAGGCGTAGAAGTGCATCGAGGTGAGCTTGGCAAACG-AGGGCTC 139 Query 203962 GGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCAT 204021 | |||||| | ||| || |||||||| ||||||||| | | || || || |||||||| Sbjct 138 GCCCATGTAGACGTTGAGCGACTGGCTCTGGTCGATGTAGGCCGAGCGGTCGGCGGCCAT 79 Query 204022 ATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTG 204061 | ||| ||| ||| | | |||||| ||||||||| Sbjct 78 GTCGATGATGACGCGCTGGGGCAGCTCCCATACCGTCTTG 39 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794369507146880