Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq79005 154 2e-32 seq77627 132 6e-26 seq68661 132 6e-26 seq71326 104 3e-17 >seq79005 Length=17376 Score = 154 bits (170), Expect = 2e-32 Identities = 408/617 (66%), Gaps = 21/617 (3%) Strand=Plus/Minus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670 ||| ||| ||||| ||||||| || || ||||| | || ||| | || | || Sbjct 1545 CCCCCAGCACATGCTCATGCGTGTTGCCGTCGGTCTTCACATGGACAACATCCCCGCCGT 1486 Query 111671 TTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 | ||||| |||||| | | || | | |||| |||||| ||||| |||||||| Sbjct 1485 CATCGAGACCTACGACTTGCTCTCGCAACAGCTCTTCACCCACGCCACACCGACCCTCTT 1426 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 |||||| || || || | || || | || || ||||| | | | |||||||| Sbjct 1425 CAACGCCGGCACCCCCCGCCCGCAGCTTTCGTCGTGCTTCCTCCTCACCATGAAGGAGGA 1366 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 || ||| | || || |||| ||| |||| | || |||| ||||| |||| ||||| Sbjct 1365 CTCGATCGAGGGTATCTACGACACGCTCAAGCAGTGCGCCCTCATCTCCAAGTCAGCTGG 1306 Query 111851 TGGTATCGG----GATGCACATC-CATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAG 111903 |||||||| | ||| || | ||| | | ||| ||| |||||| || | | Sbjct 1305 CGGTATCGGCGTCGCTGCCCACCGCAT-----CCGCGCCTCCAA--CTCGTACATTCGCG 1253 Query 111904 GTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 111963 | || || || || | ||| | | || ||||| ||||| | |||| ||| || | Sbjct 1252 GCACCAACGGCACCTCGAACGGTCTCGTCCCGATGCTGCGCGTCTACAACGACACCGCCC 1193 Query 111964 GCTATGTAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCAT 112020 |||| || |||| | || | |||||||| | | || ||||||| ||||| | Sbjct 1192 GCTACGTCGACCAGGGCGGCGGCAAGCGCAAGGGCGCCTTTGCCATCTATCTCGAGCCGT 1133 Query 112021 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG--C 112078 ||||||| || ||| | || || | ||| | ||||| || | |||||| | Sbjct 1132 GGCACGCCGACATCTTTGACTTTTTGGAGCTCAAGAAGAACCACGGCAAGGAGGAGAACC 1073 Query 112079 GCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGA 112138 ||| | ||||| ||||||| || || ||||| || || |||||||||||| | || || Sbjct 1072 GCGCT--CGCGACCTCTTCTACGGCCTGTGGATCCCCGACCTCTTCATGAAGCGCGTCGA 1015 Query 112139 GGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGT 112198 | | ||| | ||||| ||||| || || || |||| ||||| || | || | Sbjct 1014 GTCTGGCGGCGACTGGTCGCTCTTCTGCCCCAACGAGGCGCCCGGCCTGTTTGACTCGTG 955 Query 112199 GGGTGAGGAGTTTGAAG 112215 ||| |||||||||||| Sbjct 954 GGGCAAGGAGTTTGAAG 938 >seq77627 Length=171561 Score = 132 bits (146), Expect = 6e-26 Identities = 179/246 (73%), Gaps = 5/246 (2%) Strand=Plus/Plus Query 102079 AGAAGAAGC--AGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGA 102136 |||| |||| | |||||| | |||||| | || || || | | | ||||| || || Sbjct 136792 AGAAAAAGCCCATCTCTTTAACGCCATCAAGACGGTGCCCTCGGTCAAGAAGAAGGCCGA 136851 Query 102137 TTGGGCTATGAAGTGGTTTGATACAAAG--TCGCGTT-CCTTTGCTGAGCGACTCTTCGC 102193 ||||| ||| |||| | | | || || || ||||||| ||||| ||| ||| Sbjct 136852 GTGGGCAATGCGGTGGATCAACAAGGAGGGTCTCGACACCTTTGCCGAGCGTCTCGTCGG 136911 Query 102194 ATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAA 102253 ||| || || ||||||||||||||||| || |||||||| | || | |||||||| Sbjct 136912 ATTCGCCGCCGTCGAGGGTATCTTCTTCTCGGGCTCCTTCTGTTCCATCTTCTGGCTCAA 136971 Query 102254 GAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 ||| || ||||||||||| || ||| ||||||||||||||| ||| || |||||||| Sbjct 136972 GAAACGCGGTCTCATGCCCGGCCTCGCCTTCTCCAACGAGCTCATCAGCCGCGACGAGGG 137031 Query 102314 ACTCCA 102319 || || Sbjct 137032 CCTGCA 137037 >seq68661 Length=10605 Score = 132 bits (146), Expect = 6e-26 Identities = 185/258 (72%), Gaps = 5/258 (2%) Strand=Plus/Minus Query 102078 GAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGAT 102137 |||||| || ||||| | |||||| |||| || || | | | ||||| || || Sbjct 2507 GAGAAGGCCCATCTCTTCAATGCCATCGAAACGGTGCCCTCGGTGAAGAAGAAGGCCGAG 2448 Query 102138 TGGGCTATGAAGTGGTTTGATACAAAGTCGCGTT----CCTTTGCTGAGCGACTCTTCGC 102193 ||||| ||| ||| | | | || ||||| ||||||| ||||| ||| | | Sbjct 2447 TGGGCGATGCGATGGATCAACAAGGAGG-GCGTTGACACCTTTGCCGAGCGCCTCGTTGG 2389 Query 102194 ATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAA 102253 ||||| || ||||| ||||||||||| || |||||||| | || | |||||||| Sbjct 2388 GTTTGCCGCAGTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGTTCCATCTTCTGGCTCAA 2329 Query 102254 GAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 ||| || ||||||||||| || ||| ||||||||||||||| ||| || |||||||| Sbjct 2328 GAAACGCGGTCTCATGCCCGGCCTCGCCTTCTCCAACGAGCTCATCAGCCGCGACGAGGG 2269 Query 102314 ACTCCACCAAGAGTTTGC 102331 || ||| |||||||| Sbjct 2268 CCTGCACGCCGAGTTTGC 2251 >seq71326 Length=3810 Score = 104 bits (114), Expect = 3e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 102172 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 102231 |||| | ||||| ||| ||| || || || ||||| ||||||||||| || || | Sbjct 2134 CCTTCCCCGAGCGTCTCATCGGCTTCGCCGCGGTCGAGGGCATCTTCTTCTCCGGCTCTT 2193 Query 102232 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 102291 ||||| | || | |||||||||||||| || || ||||| ||||| |||| ||||| Sbjct 2194 TCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCCGGTCTTGCCTTCAGCAACG 2253 Query 102292 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||||||| || |||||||| || ||| || ||||| Sbjct 2254 AGCTTATCAGCCGCGACGAGGGTCTGCACTGCGACTTTGC 2293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620129044434560