Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq79005 194 2e-44 seq77627 93.3 5e-14 seq71326 82.4 9e-11 >seq79005 Length=17376 Score = 194 bits (214), Expect = 2e-44 Identities = 934/1466 (64%), Gaps = 33/1466 (2%) Strand=Plus/Plus Query 109672 GACCAGAGACCGACCTTTTTGAGATCGT-CAACAAGATGCTTGTTGACCACGACAAATTC 109730 |||||||| ||| | | ||| ||| ||||| | |||| |||||| ||| || || Sbjct 91 GACCAGAGGCCGCGCAGCTGGAGCTCGCGCAACAGG-TGCTCGTTGACGACGGTGAAGTC 149 Query 109731 ACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTT 109790 || ||||| |||| || ||||||||| ||||||||||| || || ||||| ||||| Sbjct 150 GCCGGCAAGGATGCGGCGCGTGTAGATGTTGGTCGTGTAGGGCTCAAAGCACTCGTTGTT 209 Query 109791 GCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAG 109850 ||| ||||| || | || || || || |||||||| || | ||| || ||| ||||| Sbjct 210 GCCGAGGATCTGCGAGGTCGAGGCAGTCGGCATGGGCGCGACGAGCAGCGAGTTGCGGAG 269 Query 109851 ACCCTTC--GTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTA 109908 || | | | | || | | | || |||| | || |||| | | | Sbjct 270 GCCGTGGCGGGCAATGTTGGCGCGCAGAGTG-GTCC-AGTCCCAACGGTC-CGACGGGAC 326 Query 109909 GTCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAA 109968 | | | |||| | || || || || |||| | || || || || | | Sbjct 327 GACGC-----CCCAGAGGTCGGGCTGCAGCTTGCCCTTCGAGGCCGGCGAGCCGGGGTAG 381 Query 109969 CTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATAC 110028 ||||||| | ||||| |||| ||||| |||| || ||| | || |||| || Sbjct 382 GTCTCGTAGGTGCCCTCGACCTGGGCCAGCTCGTTCGAGGCCACGCAAGCGGCATAGTAG 441 Query 110029 ATAGTCTCAAAAATATGAGCATTCATGAG---GCGAGACTCTTCACAGTCGAAGGGAAGA 110085 || |||||||| || | || | |||| ||| | ||| || | || | || || Sbjct 442 ATGGTCTCAAAGATG-GCGCGGT--TGAGCTCGCGGGCCTCGTCGCTCTCCCACGGGTGA 498 Query 110086 CCACAAAGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTC 110145 | | || || || || || || ||||| || || | || |||||||| || | Sbjct 499 CGCAGGATCATGAAGACGTCGGCCAGGCCCTGCACGCCAATGCCGATGGGGCGGTGGCGC 558 Query 110146 ATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGA 110205 ||| ||| || || || ||||| ||||| |||||| ||| ||||| Sbjct 559 TGGTTCGAGGTGCGGGCCTCGGGCACCGGGTAGTAGTTGATGTCGATCACCTTGTTGAGG 618 Query 110206 TTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCC 110265 ||||| || || ||| | ||| || || | || ||| ||| | |||| | Sbjct 619 TTCTTGGTGACGACCTTGACCACGTCAAACAGCTTCTGGTGATCAAAC-TGGCCGTCGAC 677 Query 110266 TTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTG 110325 ||| | ||||| || || || || || || |||||||| | ||||| Sbjct 678 GA--TGA---ACTTGGGCAGGGCGATCGAGGCCAGGTTGCACACGGCCACTTCGTCGGGC 732 Query 110326 TCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTC 110385 |||||| | | | ||||| |||| ||| || || || |||| || || | Sbjct 733 GAGGTGTACTGGATGACCTCCGTGCACAGGTTCGACGACTGGATCGTGCCCAGGTGCTGC 792 Query 110386 TGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTC 110445 || ||||| ||| |||||| || ||||| ||||||||||| || || ||||| || || Sbjct 793 TGGTTCGACTTGCTGTTGCAGGCGTCCTTGTAGAGCATGTAGGGCGTGCCAGTCTCGATC 852 Query 110446 TGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCT 110505 || |||| ||| || || ||| | || ||| ||| | ||| | || Sbjct 853 TGCGACTCGAGGATCGCAAACCAGAGCTCCTGGGCCTTGACCACCCGGCGGGCGCGGCCC 912 Query 110506 TCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCC 110565 ||| |||||| ||| || ||||| |||| || || ||| | || || Sbjct 913 TCCAGCTCGTAGCGCTCATACTTCTCTTCAAACTCCTTGCCCCACGAGTCAAACAGGCCG 972 Query 110566 TTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAAC 110625 ||||| || ||| |||||||| ||||| | || || ||| || | ||||||||| Sbjct 973 GGCGCCTCGTTGGGGCAGAAGAGCGACCAGTCGCCGCCAGACTCGACGCGCTTCATGAAG 1032 Query 110626 AGGTCAGGAATCCACATCGCCG-AGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTG 110684 ||||| || ||||||| |||| |||| ||||| || || ||| || | || || Sbjct 1033 AGGTCGGGGATCCACAG-GCCGTAGAAGAGGTCGCGAGCGCGGTTCTCCTCCTTGCCGTG 1091 Query 110685 GTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGC 110744 ||| |||||||||||||| | ||| || | |||||| || |||||||||| || Sbjct 1092 GTTCTTCTTGAGCTCCAAAAAGTCAAAGATGTCGGCGTGCCACGGCTCGAGATAGATGGC 1151 Query 110745 GATGGATCCCTTACG---ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGAC 110801 | || ||||| || | || |||||| || ||||| || ||| | ||| |||| Sbjct 1152 AAAGGCGCCCTTGCGCTTGCCGCCGCCCTGGTCGACGTAGCGGGCGGTGTCGTTGTAGAC 1211 Query 110802 CCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATT 110861 | ||||| || | | || | || || || || || | ||| || || Sbjct 1212 GCGCAGCATCGGGACGAGACCGTTCGAGGTGCCGTTGGTGCCGCGAATGTACGAGTTGGA 1271 Query 110862 GGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA 110921 ||| || ||| |||| | | || ||||| || || |||| || | || || Sbjct 1272 GGCGCGGATGCGGTGGGCAGCGACGCCGATACCGCCAGCTGACTTGGAGATGAGGGCGCA 1331 Query 110922 CTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCA 110981 || |||| || | || ||||| || ||||| || |||| ||| | || ||||| Sbjct 1332 CTGCTTGAGCGTGTCGTAGATACCCTCGATCGAGTCCTCCTTCATGGTGAGGAGGAAGCA 1391 Query 110982 AGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAA 111041 || || | ||| || || || || || || |||||||| || ||||| || || |||| Sbjct 1392 CGACGAAAGCTGCGGGCGGGGGGTGCCGGCGTTGAAGAGGGTCGGTGTGGCGTGGGTGAA 1451 Query 111042 CAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACC--GTGA 111099 || ||| || | | || ||| || |||| ||| ||| || || || |||| Sbjct 1452 GAGCTGTTGCGAGAGCAAGTCGTAGGTCTCGATGACGGCGGG--GATGTTGTCCATGTGA 1509 Query 111100 ATACCAATGGCAACTCGCATGAACAT 111125 | ||| | |||||| ||||||| ||| Sbjct 1510 AGACCGACGGCAACACGCATGAGCAT 1535 >seq77627 Length=171561 Score = 93.3 bits (102), Expect = 5e-14 Identities = 531/831 (64%), Gaps = 41/831 (5%) Strand=Plus/Plus Query 109393 GCTTTCGCCTTCGAGCGAAGATAATACATACCCGTTTTGAGACCAGCCTT---CCATGCG 109449 || || ||||| | ||| || || ||||| || || ||||| || ||| ||| ||| Sbjct 143700 GCCTTGGCCTTGGTGCGGAGGTAGTACATGCCGGTCTTGAGGCC---CTTGCGCCAGGCG 143756 Query 109450 TACATATGCATTGAAGAGAGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGAC 109509 || | ||||| || | ||| |||| | || ||| |||| | ||||| |||| Sbjct 143757 TAGAAGTGCATGGACGTGAGCTTGGGGAAGGTGGGATCGGCCATGTGGAGGTTCAGCGAC 143816 Query 109510 TGAGACTGATCGATGAATCGACCA-CGATCAGCCGCCATGTCGATGAT-ACACTTTTGGC 109567 || ||| || ||| | | | | || || || || | ||||||||| || | | || Sbjct 143817 TGGCTCTGGTCAATGTAG-GCCGAGCGGTCGGCGGCTAGGTCGATGATGACGCGCT--GC 143873 Query 109568 TA-ATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTT 109626 | || ||||| || |||||||| | ||||| ||| | || || || ||||| Sbjct 143874 GAGATCTCCCACACGGTCTTGTAGAGGGCCTTGAGATCTTGCGGGATCTCGTCGATGCCC 143933 Query 109627 TGAATAGAGCCACCAGCCTTCACCATGAGATCCTTCATC-TCTT-TCG-ACCAGAGACCG 109683 || | ||||| | ||| | |||| | ||| || |||| ||| ||||||| || Sbjct 143934 TGCACGGAGCCGTTA---TTCCCGATGATGGCGTTCTTCATCTTCTCGGACCAGAGCCCT 143990 Query 109684 ACCTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTG 109743 || |||| ||| || || || ||||||||| | || || || | || | Sbjct 143991 CTCTGCATGAGGTCGCGCACGAGGTGTGGGTTGACCACCATGAAATCGCCTCCGAGCACG 144050 Query 109744 CGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGT 109803 || ||||||||| ||||||||||||||||| ||| ||| || ||||| || Sbjct 144051 ATGCGCTTGTAGATGTTGGTCGTGTAGGGTTCGAACGCCTCGCAGTTACCGAGGATCTGC 144110 Query 109804 GCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGAC-CCTTCG-TCT 109861 | || ||||| |||||||| || |||| || ||| | | | |||| || | | || Sbjct 144111 GACGTCGAAGCGGTGGGCATCGGCGCCACCAGCAGA--GAATTGTAGACGCCGTGGAGCT 144168 Query 109862 TTACCCGCTCACGCATTGCGTCCCAAT----CATAACGACCACTAAATTTAGTCTCACCA 109917 | | |||| | |||| |||| | |||| || || || | | Sbjct 144169 TGATGTTGGCACGAAGTGCGGCCCAGTCCCACATATCG--GACGGAA--------CGACG 144218 Query 109918 TCCCACATATCTGGTTGAAGTACACCCTCAGCAG-CAGGAGAACCCTTGAAACTCTCGTA 109976 ||||||| || || ||||| || ||| | | || | || |||||| | | ||||||| Sbjct 144219 CCCCACATGTCCGGCTGAAGGACGCCC-CGGGAGACGGGCGAACCCGCGTAGGTCTCGTA 144277 Query 109977 CGACCCCTCAA---CCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGT 110033 || || | | ||| ||||| |||| || ||||| || | || || | || || Sbjct 144278 CGTCCGGCCGAGCTCCTTGGCCATCTCGTTGGATGCCTCGAGGGAGGCGTGGTGGATGGT 144337 Query 110034 CTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAG 110093 ||| || || | ||| | | ||| | | | | ||| | || || || Sbjct 144338 CTCGAAGATGAGGCGATTGAGGTCGCGTGCTTGCTGGCTGTCCCACGGGTAACGCATGAG 144397 Query 110094 AATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGA 110153 || || ||||||||||||||||| || |||| || ||||| | || |||||| || Sbjct 144398 CATGAAGACATCCGCTAGACCCTGCACGCCGATCCCGATGGGCCTGTGGCGCATGTTCGA 144457 Query 110154 GCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAG 110204 | |||| || | ||||| ||||| ||||||||| || ||||| Sbjct 144458 GTGTCGGGCCTCGGGGATCGGGTAGTGGTTGCCGTCGATGACTCGGTTGAG 144508 Score = 82.4 bits (90), Expect = 9e-11 Identities = 240/367 (65%), Gaps = 2/367 (1%) Strand=Plus/Plus Query 110394 TTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTT 110453 |||| ||||||||| |||||||||||||| || || || || || || ||||||| Sbjct 144760 TTTGCCGTTGCATGCGTCCTTATAGAGCATATAGGGCGTGCCGGTCTCGACTTGTGACTC 144819 Query 110454 GAGAATGGCCTTCCATACATCGGCGGCGGGGACAGTTGCGT-TAGCGAGACCTTCCTCCT 110512 ||| || || ||| | || || || | ||||| ||| | |||||| || Sbjct 144820 GAGGATCGCGAACCACAGCTCCTGTGCCTTGA-TGGTGCGTCGGGCGCGGCCTTCCCGCT 144878 Query 110513 CGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCT 110572 | || | |||| | ||||| || | | ||| | || || ||||||| || | Sbjct 144879 CATATCGGATGTAGAGTTCCTCGAACTGGTCTCCCCAAACGTCCTGAAGACCCGGTGCTT 144938 Query 110573 TGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAG 110632 | ||| ||| || ||||| | ||||| |||| || | ||||||||| || || | Sbjct 144939 CATTGGGGTCGAACAGCGACCAGTAGCCACCAGCCTCGACGCGCTTCATGAATAGATCCG 144998 Query 110633 GAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGC 110692 | | ||||| || |||| ||||| || || ||| || | || ||||| Sbjct 144999 GGACCCACAGGGCGTAGAAGAGGTCGCGAGCGCGGTTCTCCTCCTTGCCGTGGTTCTTCT 145058 Query 110693 GTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATC 110752 || || | || || | ||| ||||| ||||| || || || |||| |||| || || Sbjct 145059 TGAGATCGAGGAACTCAAAGATGTCCGAATGCCAGGGCTCCAGGTAGATCGCGAAGGCTC 145118 Query 110753 CCTTACG 110759 |||| || Sbjct 145119 CCTTTCG 145125 >seq71326 Length=3810 Score = 82.4 bits (90), Expect = 9e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 119528 GATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTCTTTAGCCAAAAGAT 119587 ||| ||||| || |||||| ||| || ||||| || || | ||||| ||||| ||||| Sbjct 2261 GATAAGCTCGTTGCTGAAGGCAAGACCGGGCATCAGGCCGCGCTTCTTGAGCCAGAAGAT 2202 Query 119588 GGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAAGCGAATAGACGCTC 119647 || || ||| || || |||||||||||||| || |||||| ||| |||||||| Sbjct 2201 GGAGCAGAAAGAGCCGGAGAAGAAGATGCCCTCGACCGCGGCGAAGCCGATGAGACGCTC 2142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588394032814400