Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq79005 223 4e-53 seq77627 111 2e-19 seq68661 111 2e-19 seq71326 82.4 9e-11 >seq79005 Length=17376 Score = 223 bits (246), Expect = 4e-53 Identities = 579/872 (66%), Gaps = 23/872 (3%) Strand=Plus/Plus Query 106452 ACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACT 106511 |||| || |||||||| || |||| ||||| || ||| || || ||||||| Sbjct 683 ACTTGGGCAGGGCGATCGAGGCCAGGTTGCACACGGCCACTTCGTCGGGCGAGGTGTACT 742 Query 106512 CTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCT 106571 | | || || |||| ||| || || ||||| |||| | || ||||| || Sbjct 743 GGATGACCTCCGTGCACAGGTTCGACGACTGGATCGTGCCCAGGTGCTGCTGGTTCGACT 802 Query 106572 TTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGA 106631 | ||||||| || ||||||||||||||||||||||| || ||||| |||| |||| || Sbjct 803 TGCTGTTGCAGGCGTCCTTGTAGAGCATGTAGGGCGTGCCAGTCTCGATCTGCGACTCGA 862 Query 106632 GAATTGCCTTCCACACATCGGCGGCTGGTACAAT--GGCGTTGGCCCGTCCCTCCGCCTC 106689 | || || ||| | || ||| || | |||| ||| || |||||| ||| Sbjct 863 GGATCGCAAACCAGAGCTCCTGGGCCTTGACCACCCGGCG--GGCGCGGCCCTCCAGCTC 920 Query 106690 GTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTT 106749 ||| || |||||||||||| ||| || ||| | || || || |||| Sbjct 921 GTAGCGCTCATACTTCTCTTCAAACTCCTTGCCCCACGAGTCAAACAGGCCGGGCGCCTC 980 Query 106750 GTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGG 106809 || || ||||| || ||||| | || || ||| || ||||||||||| ||||| || Sbjct 981 GTTGGGGCAGAAGAGCGACCAGTCGCCGCCAGACTCGACGCGCTTCATGAAGAGGTCGGG 1040 Query 106810 AATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCG 106869 ||||||||| | ||||| || | | || ||| || | || ||||| || Sbjct 1041 GATCCACAGGCCGTAGAAGAGGTCGCGAGCGCGGTTCTCCTCCTTGCCGTGGTTCT-TCT 1099 Query 106870 TAA-CTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATC 106928 | | ||| | || || | ||| || |||||||| ||||| ||||||| || | | | Sbjct 1100 TGAGCTCCAAAAAGTCAAAGATGTCGGCGTGCCACGGCTCGAGATAGATGGCAAAGGCGC 1159 Query 106929 CCTTTCGAC-GCC--CAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCA 106985 |||| || ||| | | || | || ||||| || ||| |||| | ||||| |||| Sbjct 1160 CCTTGCGCTTGCCGCCGCCCTGGTCGACGTAGCGGGCGGTGTCGTTGTAGACGCGCAGCA 1219 Query 106986 TTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAAT--ACGAGATTTATTGGCTCT 107043 | || | | ||| | || || || || || ||||| ||||| | | ||| | Sbjct 1220 TCGGGACGAGACCGTTCGAGGTGCCGTTGGTGCCGCGAATGTACGAGTTGGA--GGCGCG 1277 Query 107044 CACATCATG-GATGTGCATC----CCAATACCCCCAGCCCACTTTGAGATTTGCGCACAC 107098 | || | || ||| | || ||||| ||||| |||| ||||| | || ||| Sbjct 1278 GA-----TGCGGTGGGCAGCGACGCCGATACCGCCAGCTGACTTGGAGATGAGGGCGCAC 1332 Query 107099 TCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAA 107158 | | | || || | |||||||| | ||| ||||||||||| ||| || |||||||| Sbjct 1333 TGCTTGAGCGTGTCGTAGATACCCTCGATCGAGTCCTCCTTCATGGTGAGGAGGAAGCAC 1392 Query 107159 CTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAAC 107218 || | |||||| | || || || || ||||||||||| ||||| ||||| |||| Sbjct 1393 GACGAAAGCTGCGGGCGGGGGGTGCCGGCGTTGAAGAGGGTCGGTGTGGCGTGGGTGAAG 1452 Query 107219 ATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATG 107278 | ||| || | | |||||| ||||| | ||| | |||| ||| ||| | Sbjct 1453 AGCTGTTGCGAGAGCAAGTCGTAGGTCTCGATGACGGCGGGGATGTTGTCCATGTGAAGA 1512 Query 107279 CCGATGGCCACACGCATAAACATGTATTGGGG 107310 |||| ||| |||||||| | ||||| ||||| Sbjct 1513 CCGACGGCAACACGCATGAGCATGTGCTGGGG 1544 >seq77627 Length=171561 Score = 111 bits (122), Expect = 2e-19 Identities = 256/379 (68%), Gaps = 10/379 (3%) Strand=Plus/Plus Query 106562 TGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTC 106621 |||||||| || |||||| || ||||| |||||||| |||||||| || ||||| Sbjct 144752 TGGTTACTTTTGCCGTTGCATGCGTCCTTATAGAGCATATAGGGCGTGCCGGTCTCGACT 144811 Query 106622 TGTGACTTGAGAATTGCCTTCCACACATCG-GCGGCTGGTACAATGG--CGTTGGCC-CG 106677 ||||||| ||| || || ||||| || | | || | |||| ||| || | || Sbjct 144812 TGTGACTCGAGGATCGCGAACCACAGCTCCTGTGCCTTG----ATGGTGCGTCGGGCGCG 144867 Query 106678 TCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAG 106737 || ||| ||| || ||||||| | || |||| || ||| |||| || Sbjct 144868 GCCTTCCCGCTCATATCGGATGTAGAGTTCCTCGAACTGGTCTCCCCAAACGTCCTGAAG 144927 Query 106738 ACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCAT 106797 ||| ||||| | | || ||| || ||||| | ||||| |||| || |||||||| Sbjct 144928 ACCCGGTGCTTCATTGGGGTCGAACAGCGACCAGTAGCCACCAGCCTCGACGCGCTTCAT 144987 Query 106798 GAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACC 106857 ||| || || || | |||||||| | ||||| || | | || ||| || | || Sbjct 144988 GAATAGATCCGGGACCCACAGGGCGTAGAAGAGGTCGCGAGCGCGGTTCTCCTCCTTGCC 145047 Query 106858 TTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGA 106916 ||||| || | | || |||||||| | ||| |||| ||||| ||||| || |||| Sbjct 145048 GTGGTT-CTTCTTGAGATCGAGGAACTCAAAGATGTCCGAATGCCAGGGCTCCAGGTAGA 145106 Query 106917 CTGCGATAGATCCCTTTCG 106935 |||| | ||||||||| Sbjct 145107 TCGCGAAGGCTCCCTTTCG 145125 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/230 (70%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 117286 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCC 117345 || || ||||| || ||| || || || || |||||| ||||| ||||||||||| Sbjct 137037 TGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGCGAGGCCGGGCATGAGACCG 136978 Query 117346 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 117405 || ||||| | ||| | || | ||||| || || ||||||||||||||||| || Sbjct 136977 CGTTTCTTGAGCCAGAAGATGGAACAGAAGGAGCCCGAGAAGAAGATACCCTCGACGGCG 136918 Query 117406 GCAAACGCAAAAAGGCGCTCGGCGAAGGAG-CGAGA--CTTTGTGTCAAACCATTTCATT 117462 || || | | || |||||||| |||| | ||||| || ||| | ||| |||| Sbjct 136917 GCGAATCCGACGAGACGCTCGGCAAAGGTGTCGAGACCCTCCTTGTTGATCCACCGCATT 136858 Query 117463 GCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAA 117512 ||||| | |||||||||| | | || || || | |||||| | ||| Sbjct 136857 GCCCACTCGGCCTTCTTCTTGACCGAGGGCACCGTCTTGATGGCGTTAAA 136808 Score = 93.3 bits (102), Expect = 5e-14 Identities = 194/289 (67%), Gaps = 0/289 (0%) Strand=Plus/Plus Query 106944 CTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTG 107003 |||||| || ||||| || ||| |||| | ||||| ||||| || || | |||| | Sbjct 145207 CTTGATCGACGTAGCGGGCAGTGTCGTTGTAGACGCGCAGCATGGGGATGAGGCCATTGG 145266 Query 107004 ATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCC 107063 | || || || || ||||| || || || | | | || | | || | Sbjct 145267 AGGTCCCGTTGGTGCCGCGAATGTAGGAGTTGGCCGCGCGGATCTTGTGCACGGCCACGC 145326 Query 107064 CAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGT 107123 | || || || || | ||| ||||| |||| ||| | || || | ||||| |||| Sbjct 145327 CGATGCCTCCCGCGCTCTTGGAGATGAGCGCGCACCGTTTGAGGGTCTCGTAGATGCCGT 145386 Query 107124 TGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTAC 107183 ||| ||||||||||| | | | || ||||||||| ||||||||| | || || | Sbjct 145387 CGATGGAGTCCTCCTTCATATCCAAGAGAAAGCAACTGCTCATCTGCGGGATGGGCGTGC 145446 Query 107184 CAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACAT 107232 |||| ||||||||||| || || ||||| |||||| | || ||||| Sbjct 145447 CAGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAACAGAAACTGAGACAT 145495 >seq68661 Length=10605 Score = 111 bits (122), Expect = 2e-19 Identities = 167/237 (70%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 ||||||||| ||| || ||||| || ||| || || || || |||||| ||||| Sbjct 2250 GGCAAACTCGGCGTGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGCGAGGCC 2309 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392 ||||||||||| || ||||| | ||| | || | ||||| || || ||||||||||| Sbjct 2310 GGGCATGAGACCGCGTTTCTTGAGCCAGAAGATGGAACAGAAGGAGCCCGAGAAGAAGAT 2369 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGA---GACTTTGTGTC 117449 ||||| || |||||| ||| ||||||||||| |||| | | || ||| Sbjct 2370 GCCCTCGACTGCGGCAAACCCAACGAGGCGCTCGGCAAAGGTGTCAACGCCCTCCTTGTT 2429 Query 117450 AAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 | |||| ||| ||||| | |||||||||| | | || || |||| |||||| Sbjct 2430 GATCCATCGCATCGCCCACTCGGCCTTCTTCTTCACCGAGGGCACCGTTTCGATGGC 2486 >seq71326 Length=3810 Score = 82.4 bits (90), Expect = 9e-11 Identities = 114/160 (71%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| |||||||| || ||| ||||| || || |||| || || Sbjct 2293 GCAAAGTCGCAGTGCAGACCCTCGTCGCGGCTGATAAGCTCGTTGCTGAAGGCAAGACCG 2234 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||| || || |||||||| | ||| | || | |||||| || |||||||||||||| Sbjct 2233 GGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAAGAGCCGGAGAAGAAGATG 2174 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGG 117433 ||||| || || || | | || ||||||| ||||| Sbjct 2173 CCCTCGACCGCGGCGAAGCCGATGAGACGCTCGGGGAAGG 2134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589397839971520