Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq78417 113 3e-20 seq76656 107 1e-18 seq78127 96.9 2e-15 seq79045 95.1 8e-15 seq69527 95.1 8e-15 seq77962 93.3 3e-14 seq66207 89.7 3e-13 seq48106 84.2 1e-11 seq28013 84.2 1e-11 seq8679 82.4 5e-11 >seq78417 Length=4549 Score = 113 bits (124), Expect = 3e-20 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | ||| | || | || || ||||| || ||||| || Sbjct 1083 TCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAG 1142 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| ||||||||| || ||| Sbjct 1143 ATAAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTC 1202 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || || ||| || |||| || ||||| || || ||||| |||||||| Sbjct 1203 TCAATSGTGTCCGAGGACTCGACCTCGAGCGTAATGGTCTTGCCGGTGAGGGTCTTCACG 1262 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 1263 AAGATCTGCAT 1273 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | || | || | || || ||||| || || ||||| Sbjct 774 TCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAG 833 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||||| || ||| Sbjct 834 ATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTC 893 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | | |||||| |||| || || || |||||||| || ||||| || Sbjct 894 TCGATCGTGTCGCTCGACTCAACCTCGAGCGTGATCGTCTTTCCCGTAAGGGTCTTGACG 953 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 954 AAGATCTGCATA 965 >seq76656 Length=3208 Score = 107 bits (118), Expect = 1e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | ||| | || | || || ||||| || || || || Sbjct 256 TCCTTCTGGATGTTGTAGTCAGCGAGGGTACGGCCGTCCTCAAGCTGCTTGCCAGCGAAG 315 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| ||||||||| || ||| Sbjct 316 ATAAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTC 375 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || || ||| || |||| || ||||| || || ||||| |||||||| Sbjct 376 TCAATSGTGTCCGAGGACTCGACCTCGAGCGTAATGGTCTTGCCGGTGAGGGTCTTCACG 435 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 436 AAGATCTGCAT 446 >seq78127 Length=10502 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | || | || | || || ||||| || ||||| || Sbjct 4 TCCTTCTGGATGTTGTAGTCAGCGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAG 63 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| |||||||| || ||| Sbjct 64 ATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTC 123 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || || ||| || |||| || || || || || ||||| |||||||| Sbjct 124 TCAATGGTGTCCGAGGACTCGACCTCGAGCGTAATAGTCTTGCCGGTGAGGGTCTTCACG 183 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 184 AAGATCTGCAT 194 >seq79045 Length=6779 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | ||| | || | || || ||||| || || || || Sbjct 3468 TCCTTCTGGATGTTGTAGTCGGCCAGGGTACGACCGTCCTCGAGCTGCTTGCCAGCGAAG 3527 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||||| || ||| Sbjct 3528 ATGAGGCGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTC 3587 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || || ||| || |||| || ||||| || || || |||||||| || Sbjct 3588 TCAATGGTGTCCGAGGACTCGACCTCGAGCGTAATGGTCTTGCCGGTCAGAGTCTTGACG 3647 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 3648 AAGATCTGCATA 3659 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886 || || ||||| || ||||| || || || || |||||||| |||| | ||||| ||| Sbjct 3780 TCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCTTTG 3839 Query 34887 TCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 || |||||||| || ||| | |||| || || ||| || |||| || ||| Sbjct 3840 TCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCCGAGGACTCGACCTCGAGCGTAATG 3899 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || ||||| |||||||| ||||||||||| Sbjct 3900 GTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 3934 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | ||| | || | || || ||||| || || || || Sbjct 3240 TCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAG 3299 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||||| || ||| Sbjct 3300 ATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTC 3359 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | ||| || |||| || || || || ||||| || || ||||| Sbjct 3360 TCGATCGTGTCGGACGACTCTACCTCGAGCGTAATCGTCTTACCCGTAAGGGTTTTCACG 3419 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 3420 AAGATCTGCATA 3431 >seq69527 Length=538 Score = 95.1 bits (104), Expect = 8e-15 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| || ||||| ||||| ||||| | || | || | || || Sbjct 306 ACCAAGTGGAGGGTGGACTCCTTCTGNATGTTGTAGTCAGCGAGCGTGCGGCCGTCCTCG 247 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||| || || || || |||||||| | || | ||||||||||| Sbjct 246 AGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGG 187 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || || ||| | || | || | || |||||| |||| || || || || Sbjct 186 ATCTTTTGCTTCACGTTCTCGATGGTATCGCTGGACTCAACCTCGAGCGTAATAGTCTTG 127 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || ||||| || ||||||||||| Sbjct 126 CCAGTCAGCGTCTTGACGAAGATCTGCAT 98 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | ||| | || | || || ||||| || ||||| || Sbjct 516 TCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAG 457 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||||| || ||| Sbjct 456 ATGAGGCGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTC 397 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | ||| || |||| || || || || ||||| || ||||| || Sbjct 396 TCGATCGTGTCGGACGACTCGACCTCGAGCGTAATCGTCTTACCCGTAAGGGTCTTGACG 337 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 336 AAGATCTGCAT 326 >seq77962 Length=8127 Score = 93.3 bits (102), Expect = 3e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | ||| | || | || || ||||| || ||||| || Sbjct 6511 TCCTTCTGGATGTTGTAGTCAGCGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 6452 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||||| |||||| Sbjct 6451 ATGAGACGCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTC 6392 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||| || |||| ||| ||||| || || || || ||||| || Sbjct 6391 TCAATAGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTGACG 6332 Query 34971 AAGATCTGCATATT 34984 ||||| ||||| || Sbjct 6331 AAGATTTGCATGTT 6318 >seq66207 Length=742 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | ||| | || | || || ||||| || ||||| || Sbjct 234 TCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 175 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||||| || ||| Sbjct 174 ATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTC 115 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || || ||| || |||| || || || || || || || ||||| || Sbjct 114 TCAATGGTGTCCGAGGACTCGACCTCGAGCGTAATAGTCTTGCCAGTCAGGGTCTTGACG 55 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 54 AAGATCTGCATA 43 >seq48106 Length=172 Score = 84.2 bits (92), Expect = 1e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 34806 TAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGG 34865 ||||| | ||| | || | || || ||||| || ||||| || || || || |||||| Sbjct 2 TAGTCGGCCAGGGTACGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGG 61 Query 34866 TCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCG 34925 || | || | ||||||||||| ||||||||| || ||| | || | || | Sbjct 62 TCGGGAGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTCTCGATGGTGTCCGAG 121 Query 34926 GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATC 34976 | ||| || |||| || ||||| || || ||||| |||||||| |||||| Sbjct 122 GACTCGACCTCGAGCGTAATGGTCTTGCCGGTGAGGGTCTTCACGAAGATC 172 >seq28013 Length=187 Score = 84.2 bits (92), Expect = 1e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||| ||||| ||||| | | | | || | || || ||||| || ||||| || || Sbjct 2 TTCTGGATGTTGTAGTCGGCCAAGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATG 61 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 || || |||||||| | || | ||||||||||| |||||||| || ||| | Sbjct 62 AGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCG 121 Query 34914 ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAG 34973 || | || | | ||| || |||| || || || || ||||| || ||||| || ||| Sbjct 122 ATGGTGTCGCTCGACTCGACCTCGAGCGTGATCGTCTTACCCGTAAGGGTCTTGACGAAG 181 Query 34974 ATCTGC 34979 |||||| Sbjct 182 ATCTGC 187 >seq8679 Length=193 Score = 82.4 bits (90), Expect = 5e-11 Identities = 114/158 (72%), Gaps = 4/158 (3%) Strand=Plus/Minus Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886 || || ||||| || ||||| || || || || |||||||| | || | |||||||| Sbjct 189 TCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTA 130 Query 34887 TCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTA 34944 || |||||||| ||||| || || || | || | || ||| || |||| || | Sbjct 129 TCCTGGATCTTCTGCTTGAC--ATTCTCAATAGTATCGCTGGACTCGACCTCGAGCGTGA 72 Query 34945 TGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || || ||||| || ||||| || |||||||||||| Sbjct 71 TCGTCTTACCCGTAAGGGTCTTGACGAAGATCTGCATA 34 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324320848801344