Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq77892 91.5 1e-13 >seq77892 Length=46295 Score = 91.5 bits (100), Expect = 1e-13 Identities = 111/145 (77%), Gaps = 6/145 (4%) Strand=Plus/Minus Query 52052 GATGGGCGACAAGTTTGCGTCGTT-CACGGCGCAAAAGGG-GACGTG-CGGAGCCGTCCT 52108 ||| |||||||||||||||||| |||||| |||||||| | | || || ||| || Sbjct 32842 GATTGGCGACAAGTTTGCGTCGCGACACGGC-CAAAAGGGCGTCATGTCGCAGCTGTG-- 32786 Query 52109 GACCCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCC 52168 | | |||||| ||||||||||| | || || || ||||||| ||||||||||||| Sbjct 32785 GCCTCAGGAGAACATGCCCTTCAGCGAGTCGGGCATGTCGCCCGACGTCATCATCAACCC 32726 Query 52169 CCACGCCTTTCCATCCAGGATGACC 52193 |||||||| || || | |||||| Sbjct 32725 GCACGCCTTCCCGTCGCGCATGACC 32701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408223938825704