Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq79045 89.7 4e-13 seq69527 87.8 1e-12 seq66207 86.0 5e-12 seq78417 82.4 6e-11 >seq79045 Length=6779 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || || ||||| || | || | || |||| || | |||||| || || || Sbjct 3239 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAA 3298 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || ||||| || |||| ||| | |||||||||||| ||||| || || || Sbjct 3299 GATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTT 3358 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || |||| ||| ||||| | ||||||||| || ||||| | ||||| || Sbjct 3359 CTCGATCGTGTCGGACGACTCTACCTCGAGCGTAATCGTCTTACCCGTAAGGGTTTTCAC 3418 Query 48755 AAAAATCTGCAT 48766 || |||||||| Sbjct 3419 GAAGATCTGCAT 3430 >seq69527 Length=538 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | || || | |||||| || || ||| ||| || || || ||||| |||| Sbjct 325 GCCGCCACGGAGGCGAAGCACCAAGTGGAGGGTGGACTCCTTCTGNATGTTGTAGTCAGC 266 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || |||| || | |||||| ||||| || || || ||||| || || | || Sbjct 265 GAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGG 206 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||||||||| |||||||| || || | | | || | ||| || Sbjct 205 GATGCCCTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCGATGGTATCGCTGGACTCAAC 146 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| | |||||| || || || |||| || || || || |||||||| Sbjct 145 CTCGAGCGTAATAGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 98 >seq66207 Length=742 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || || ||||| |||| || | || |||| || | |||||| ||||| || Sbjct 235 CTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 176 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || ||||| || |||| ||| | |||||||||||| ||||| || || || Sbjct 175 GATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTT 116 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || | ||| ||||| | |||||| || || || |||| || || || Sbjct 115 CTCAATGGTGTCCGAGGACTCGACCTCGAGCGTAATAGTCTTGCCAGTCAGGGTCTTGAC 56 Query 48755 AAAAATCTGCAT 48766 || |||||||| Sbjct 55 GAAGATCTGCAT 44 >seq78417 Length=4549 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || || || ||||| || | || | || |||| || | |||| Sbjct 762 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCCTCGAGCTGC 821 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || ||||| || || ||||| || |||| ||| | |||||||||||| ||||| Sbjct 822 TTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTC 881 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || || || | | | || || ||| ||||| | ||| ||||| |||||||| Sbjct 882 TGCTTCACGTTCTCGATCGTGTCGCTCGACTCAACCTCGAGCGTGATCGTCTTTCCCGTA 941 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | || || || || |||||||| Sbjct 942 AGGGTCTTGACGAAGATCTGCAT 964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380570605668504