Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= NC_019406.1 Length=279967 Score E Sequences producing significant alignments: (Bits) Value seq70080 100 5e-16 seq71883 96.9 6e-15 >seq70080 Length=5995 Score = 100 bits (110), Expect = 5e-16 Identities = 272/423 (64%), Gaps = 55/423 (13%) Strand=Plus/Plus Query 168273 CCCTTGACGCACAACACCTGCTTGAGGGTGGCGACGATCTCCACCATTTCTTCCTGGGCC 168332 ||||||||||| | ||||||||||||||| |||| ||| || | || |||||| Sbjct 230 CCCTTGACGCAAAGGACCTGCTTGAGGGTGTGCACGACCTCGACGAGATCGGTTTGGGCC 289 Query 168333 GCCATGACGAGTTCGATCGGCTTGTAAGCCTTCGGCGTCTCGTCGATCACGCCTTCGTCC 168392 ||||||| ||||| |||||| || ||||| ||||| | | | | |||| Sbjct 290 TGCATGACGGCGTCGATGTCCTTGTACGCTCGAGGCGTTTCGTCCAGGAGGTCGGCGTCA 349 Query 168393 TTGCGGCACTCGACGCCCTTCGTGGCTTCGACGTGCTCGTCCAGGGAGACGAGCTTCTTC 168452 | || ||||||||||| |||| | | | ||| || || || | || |||| ||| Sbjct 350 TGTCGACACTCGACGCCACGCGTGTCATGCAGGTGGTCCTCGAGCGTGAAGAGCCGCTTA 409 Query 168453 GCCGCCGAACGCGACATG-ACGCGGCCGGCGCCGTGGCTGCAC----------------- 168494 || ||| ||||| ||| ||||| ||||| ||||||||||| Sbjct 410 GCTGCCCCGCGCGA-ATGCACGCGCCCGGCTCCGTGGCTGCAGCTGTGGAAACTCTCGGC 468 Query 168495 --------------GAGC---------AGAAGGC---------GTCA--GCGTGGCCCTT 168520 |||| ||| ||| |||| || |||| | Sbjct 469 ATTGCCCCGTCCTAGAGCCAGAAAGTGAGATGGCTGAGCTCAAGTCAAAGCCTGGCGCAC 528 Query 168521 GC--CGCGCACGATGAACGACTTGGCGCCCATCGAACCCGGAATGATGCCGAGTTCGTCC 168578 || |||| |||||| | |||||||||||||| || || |||||||| || ||| || Sbjct 529 GCACCGCGGACGATGTAGCTTTTGGCGCCCATCGAGCCAGGGATGATGCCCAGCTCGCCC 588 Query 168579 TTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAGATGTCCTCGCCGAAGTGGCGTTCC 168638 || | || |||||| |||||||| |||||||| | ||||| ||| |||||| | ||| Sbjct 589 TTGCGGGCGCTCACCGCTCCCTTGCGCGTCACGAACACGTCCTTGCCAAAGTGGTGCTCC 648 Query 168639 TTG 168641 || Sbjct 649 CTG 651 >seq71883 Length=11894 Score = 96.9 bits (106), Expect = 6e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 168273 CCCTTGACGCACAACACCTGCTTGAGGGTGGCGACGATCTCCACCATTTCTTCCTGGGCC 168332 ||||||||||| | ||||||||||||||| |||| || || | || |||||| Sbjct 5766 CCCTTGACGCAAAGGACCTGCTTGAGGGTGTGCACGACTTCGACGAGATCGGTTTGGGCC 5707 Query 168333 GCCATGACGAGTTCGATCGGCTTGTAAGCCTTCGGCGTCTCGTCGATCACGCCTTCGTCC 168392 ||||||| ||||| |||||| || ||||| ||||| | | | | |||| Sbjct 5706 TGCATGACGGCGTCGATGTCCTTGTACGCTCGAGGCGTTTCGTCCAGGAGGTCGGCGTCA 5647 Query 168393 TTGCGGCACTCGACGCCCTTCGTGGCTTCGACGTGCTCGTCCAGGGAGACGAGCTTCTTC 168452 | || ||||||||||| |||| | | | ||| || || || | || |||| ||| Sbjct 5646 TGTCGACACTCGACGCCACGCGTGTCATGCAGGTGGTCCTCGAGCGTGAAGAGCCGCTTA 5587 Query 168453 GCCGCCGAACGCGACATG-ACGCGGCCGGCGCCGTGGCTGCA 168493 || ||| ||||| ||| ||||| ||||| ||||||||||| Sbjct 5586 GCTGCCCCGCGCGA-ATGCACGCGCCCGGCTCCGTGGCTGCA 5546 Score = 95.1 bits (104), Expect = 2e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 168522 CCGCGCACGATGAACGACTTGGCGCCCATCGAACCCGGAATGATGCCGAGTTCGTCCTTC 168581 ||||| |||||| | |||||||||||||| || || |||||||| || ||| |||| Sbjct 5464 CCGCGGACGATGTAGCTTTTGGCGCCCATCGAGCCAGGGATGATGCCCAGCTCGCCCTTG 5405 Query 168582 TGCGCCGACACCGCGCCCTTGCGGGTCACGAAGATGTCCTCGCCGAAGTGGCGTTCCTTG 168641 | || |||||| |||||||| |||||||| | ||||| ||| |||||| | ||| || Sbjct 5404 CGGGCGCTCACCGCTCCCTTGCGCGTCACGAACACGTCCTTGCCAAAGTGGTGCTCCCTG 5345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 894881293220160