Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= NC_019407.1 Length=218929 Score E Sequences producing significant alignments: (Bits) Value seq71883 118 1e-21 seq70080 118 1e-21 >seq71883 Length=11894 Score = 118 bits (130), Expect = 1e-21 Identities = 130/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 135406 AGCCCTTCACGCAGAGGACTTGCTTGAGGGTGTGGACGATGTCCACGAGGTCCTTCTGGG 135465 ||||||| ||||| ||||| |||||||||||||| |||| || ||||| || | |||| Sbjct 5768 AGCCCTTGACGCAAAGGACCTGCTTGAGGGTGTGCACGACTTCGACGAGATCGGTTTGGG 5709 Query 135466 CCTCCATGACCGCGTCGATGTCCTTGTAGGCCATCGGGATTTCGTCGATCACGCCAGCGT 135525 ||| |||||| ||||||||||||||||| || || ||||||| | | | | |||| Sbjct 5708 CCTGCATGACGGCGTCGATGTCCTTGTACGCTCGAGGCGTTTCGTCCAGGAGGTCGGCGT 5649 Query 135526 CCTTACGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCCTCCAGGGTGAAG 135578 | | || ||||| ||||| ||| | | | |||||||| || |||||| Sbjct 5648 CATGTCGACACTCGACGCCACGCGTGTCATGCAGGTGGTCCTCGAGCGTGAAG 5596 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 135657 CCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATCCCGAACTGGTCCTTC 135716 ||||| ||||||||| ||||| ||||||||||| |||||||| || | || | |||| Sbjct 5464 CCGCGGACGATGTAGCTTTTGGCGCCCATCGAGCCAGGGATGATGCCCAGCTCGCCCTTG 5405 Query 135717 TGCGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAAGTGG 135767 | || |||||| |||||||| |||||||| || || | | |||||| Sbjct 5404 CGGGCGCTCACCGCTCCCTTGCGCGTCACGAACACGTCCTTGCCAAAGTGG 5354 >seq70080 Length=5995 Score = 118 bits (130), Expect = 1e-21 Identities = 130/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 135406 AGCCCTTCACGCAGAGGACTTGCTTGAGGGTGTGGACGATGTCCACGAGGTCCTTCTGGG 135465 ||||||| ||||| ||||| |||||||||||||| |||| || ||||| || | |||| Sbjct 228 AGCCCTTGACGCAAAGGACCTGCTTGAGGGTGTGCACGACCTCGACGAGATCGGTTTGGG 287 Query 135466 CCTCCATGACCGCGTCGATGTCCTTGTAGGCCATCGGGATTTCGTCGATCACGCCAGCGT 135525 ||| |||||| ||||||||||||||||| || || ||||||| | | | | |||| Sbjct 288 CCTGCATGACGGCGTCGATGTCCTTGTACGCTCGAGGCGTTTCGTCCAGGAGGTCGGCGT 347 Query 135526 CCTTACGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCCTCCAGGGTGAAG 135578 | | || ||||| ||||| ||| | | | |||||||| || |||||| Sbjct 348 CATGTCGACACTCGACGCCACGCGTGTCATGCAGGTGGTCCTCGAGCGTGAAG 400 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 135657 CCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATCCCGAACTGGTCCTTC 135716 ||||| ||||||||| ||||| ||||||||||| |||||||| || | || | |||| Sbjct 532 CCGCGGACGATGTAGCTTTTGGCGCCCATCGAGCCAGGGATGATGCCCAGCTCGCCCTTG 591 Query 135717 TGCGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAAGTGG 135767 | || |||||| |||||||| |||||||| || || | | |||||| Sbjct 592 CGGGCGCTCACCGCTCCCTTGCGCGTCACGAACACGTCCTTGCCAAAGTGG 642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 699752690493120