Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= NC_019408.1 Length=223720 Score E Sequences producing significant alignments: (Bits) Value seq71883 89.7 7e-13 seq70080 89.7 7e-13 >seq71883 Length=11894 Score = 89.7 bits (98), Expect = 7e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 139632 CCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATGCCGAACTGGTCCTTC 139691 ||||| ||||||||| ||||| ||||||||||| ||||||||||| | || | |||| Sbjct 5464 CCGCGGACGATGTAGCTTTTGGCGCCCATCGAGCCAGGGATGATGCCCAGCTCGCCCTTG 5405 Query 139692 TGAGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAAGTGGAACTCC 139748 | || |||||| |||||||| |||||||| || || | | |||||| |||| Sbjct 5404 CGGGCGCTCACCGCTCCCTTGCGCGTCACGAACACGTCCTTGCCAAAGTGGTGCTCC 5348 >seq70080 Length=5995 Score = 89.7 bits (98), Expect = 7e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 139632 CCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATGCCGAACTGGTCCTTC 139691 ||||| ||||||||| ||||| ||||||||||| ||||||||||| | || | |||| Sbjct 532 CCGCGGACGATGTAGCTTTTGGCGCCCATCGAGCCAGGGATGATGCCCAGCTCGCCCTTG 591 Query 139692 TGAGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAAGTGGAACTCC 139748 | || |||||| |||||||| |||||||| || || | | |||||| |||| Sbjct 592 CGGGCGCTCACCGCTCCCTTGCGCGTCACGAACACGTCCTTGCCAAAGTGGTGCTCC 648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715068741734400