Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq79005 304 2e-77 seq71326 208 1e-48 seq68661 205 2e-47 seq77627 114 2e-20 >seq79005 Length=17376 Score = 304 bits (336), Expect = 2e-77 Identities = 720/1080 (67%), Gaps = 27/1080 (3%) Strand=Plus/Plus Query 221491 ACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGTCT 221550 |||||| ||| |||||||||||||| ||||| || || || |||||||| | ||| | Sbjct 498 ACGCAGGATCATGAAGACGTCGGCCAGGCCCTGCACGCCAATGCCGATGGGGCGGTGGCG 557 Query 221551 CCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTTGAG 221610 | ||| || | | || || ||||| || || |||||| |||||||| |||||||| Sbjct 558 CTGGTTCGAGGTGCGGGCCTCGGGCACCGGGTAGTAGTTGATGTCGATCACCTTGTTGAG 617 Query 221611 GTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAACTCGCC 221670 |||| |||| ||| || ||||| || |||||||||||||| | |||| ||| Sbjct 618 GTTCTTGGTGACGACCTTGACCACGTCAAACAGCTTCTGGTGAT------CAAACTGGCC 671 Query 221671 GCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACACACGGC 221730 | || || || || || ||||| | ||||||||| |||||||| Sbjct 672 GTCGACGATGA--------ACTTGGGC----AGGGCGATCGAGGCCAGGTTGCACACGGC 719 Query 221731 CACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGT 221790 ||| ||||| ||| ||||| |||| ||| || || ||||| ||| ||| || Sbjct 720 CACTTCGTCGGGCGAGGTGTACTGGATGACCTCCGTGCACAGGTTCGACGACTGGATCGT 779 Query 221791 CCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACC 221850 |||||||| | || || ||||||| ||| ||||||||||||||||| |||| Sbjct 780 GCCCAGGTGCTGCTGGTTCGACTTGCTGTTGCAGGCGTCCTTGTAGAGCATGTAGGGCGT 839 Query 221851 GCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGGCGCTCACCGTCCT 221910 ||||||||| | ||| | | | || ||| |||||| || ||| | ||| || Sbjct 840 GCCAGTCTCGATCTGCGACTCGAGGATCGCAAACCAGAGCTCCTGGGCCTTGACCACCCG 899 Query 221911 CTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTA 221970 | | ||||| || | || | ||| | ||||||| | || | Sbjct 900 GCGGGCGCGGCCCTCCAGCT---CGTAGCGCTCATACTTCTCTTCAAACTCCTTGCCCCA 956 Query 221971 CGCCTCGTCCAGGCCTGGACACCTGGC-GGGACACATCAGACTCCAGT-GCTTGTTGTCT 222028 || || |||||| || | ||| | ||| || | || ||||| || | || Sbjct 957 CGAGTCAAACAGGCCGGG-CGCCTCGTTGGGGCAGAAGAGCGACCAGTCGCCGCCAGACT 1015 Query 222029 TTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGC 222088 ||| | || |||||||||||| ||||||||||| | | ||||| || | | || Sbjct 1016 C-GACGCGCTTCATGAAGAGGTCGGGGATCCACAGGCCGTAGAAGAGGTCGCGAGCGCGG 1074 Query 222089 TGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCAC 222148 | ||||||| ||||| ||| ||| | || |||||||| ||||| ||||| ||||||||| Sbjct 1075 TTCTCCTCCTTGCCGTGGTTCTTCTTGAGCTCCAAAAAGTCAAAGATGTCGGCGTGCCAC 1134 Query 222149 GGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTC 222208 ||||| ||||||| ||| | ||||| |||||| ||| ||||| || || | Sbjct 1135 GGCTCGAGATAGATGGCAAAGGCGCCCTTGCGCTTGCCGCCGCCCTGGTCGACGTAGCGG 1194 Query 222209 TCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCC 222268 | ||||| ||| ||| || |||| || || ||||| || ||||||||||| Sbjct 1195 GCGGTGTCGTTGTAGACGCGCAGCATCGGGACGAGACCGTTCGAGGTGCCGTTGGTGCCG 1254 Query 222269 TTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGACATGCCGATACCACCGGCGTGT 222328 |||||||| | ||| | | | ||||| | ||||||||| || || Sbjct 1255 CGAATGTACGAGTTGGAGGCGCGGATGCGGTGGGCAGCGACGCCGATACCGCCAGCTGAC 1314 Query 222329 TTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTG 222388 || ||||| | |||||| |||||| ||||| ||| ||||| || ||||||||||| Sbjct 1315 TTGGAGATGAGGGCGCACTGCTTGAGCGTGTCGTAGATACCCTCGATCGAGTCCTCCTTC 1374 Query 222389 ACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTG 222448 | | | || || || || ||||| | ||| | || || | |||||| || || || Sbjct 1375 ATGGTGAGGAGGAAGCACGACGAAAGCTGCGGGCGGGGGGTGCCGGCGTTGAAGAGGGTC 1434 Query 222449 GGACTGGCGTGTGTAAAGTAGCCCCT-AGACATCAGATCGTACGTCTCTACGACTCTGGC 222507 || ||||||| || ||| ||| | || | || ||||| ||||| | ||| || Sbjct 1435 GGTGTGGCGTGGGTGAAG-AGCTGTTGCGAGAGCAAGTCGTAGGTCTCGATGACGGCGGG 1493 Query 222508 GATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTGGGGCCTCTCCAC 222567 |||||||||| ||||| | ||| | |||| ||||| |||||| | ||| || Sbjct 1494 GATGTTGTCCATGTGAAGACCGACGGCAACACGCATGAGCATGTGCTGGGGGCGCTCGAC 1553 >seq71326 Length=3810 Score = 208 bits (230), Expect = 1e-48 Identities = 449/657 (68%), Gaps = 26/657 (4%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||||||||||||||||| | ||| |||||||||||| ||| | ||| || Sbjct 1740 ATTTGGGAGATGTACAAGAAGGCCGAGGCCTCGTTCTGGACCGCCGAGGAGGTCGATTTG 1799 Query 25537 GCCAAGGACATGGACGGCTGG--TACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGT 25594 | |||||| | |||| | ||||| | ||| |||||| |||| || ||||| Sbjct 1800 AGCGCCGACATGAAGCACTGGGCTTCGCTCAA--CAACGACGAGAAGCACTTCATCAAGC 1857 Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGAT 25654 ||||| |||| ||||| || ||| ||||| || || |||||| ||| | | | Sbjct 1858 ACGTGCTGGCCTTCTTCGCCGCCAGCGATGGCATCGTCGCCGAGAACCTGGCTGGCCGCT 1917 Query 25655 TCACCAGGGAAGTGCA-GTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 ||| | ||||||||| || | | |||| || |||||||| |||||||| || ||| Sbjct 1918 TCATGAAGGAAGTGCAAGTGCCCG-AGGCGCGCTGCTTCTACGGCTTCCAGATCGCTATC 1976 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTC 25770 || || | ||||| || |||| | ||| || || || ||| ||| ||| Sbjct 1977 GAGAACATCCACTCGGAAATGTACTC---GCTCCTCATCGACACCTACGTTAAAGATCCG 2033 Query 25771 GCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCG 25830 ||||| || | || || | ||||| ||| | ||| | |||| |||||| Sbjct 2034 ATCGAGAAGGACCACCTCTTCCGGGCCATGGAGACTGTGCCCTCGGTGAAGAAGAAGGCC 2093 Query 25831 CGGTGGGCCATGAAGTGGATCAACAGCCAGAG---CGCTACGTTTGGCGAGCGGCTGGTA 25887 |||||||||| ||||| || || | || || || |||||| || | Sbjct 2094 GAGTGGGCCATGCGCTGGATTTGCAAGGAGGGTGTCGAGACCTTCCCCGAGCGTCTCATC 2153 Query 25888 GCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCT 25946 | ||| || || || ||||||||||| ||| ||| || || ||| ||||||||||||| Sbjct 2154 GGCTTCGCCGCGGTCGAGGGCATCTTCTTCTCCGGCTCTTTCTGC-TCCATCTTCTGGCT 2212 Query 25947 CAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGA 26006 |||| || || |||||||| || ||| ||||||||| |||||| | ||||| Sbjct 2213 CAAGAAGCGCGGCCTGATGCCCGGTCTTGCCTTCAGCAACGAGCTTATCAGCCGCGACGA 2272 Query 26007 GGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTC 26066 |||||| ||| | || ||||| ||||| |||||| ||| || || |||| || | Sbjct 2273 GGGTCTGCACTGCGACTTTGCTTGCCTCCTCTAC---GGCATGCTGGTCAACAAGCC--C 2327 Query 26067 TCAAGAGAC-CGTCTA--CAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTT 26120 || | ||| | | | ||| ||| || |||||||| ||||||||||||||||| Sbjct 2328 TCGACCGACGTGCCCAAGCAG-ATCGTCCTTGAGGCTGTCGAGATCGAGAAGGAGTT 2383 >seq68661 Length=10605 Score = 205 bits (226), Expect = 2e-47 Identities = 445/653 (68%), Gaps = 16/653 (2%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||||||||||||||||| | ||| |||||| ||||| ||| | ||||| Sbjct 2804 ATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACAGCCGAGGAGGTCGATCTC 2745 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTAC 25596 | | | |||||| | |||| | |||| || ||||| ||||| || ||||| || Sbjct 2744 GGCGACGACATGAAGCACTGGCAATCTCTCTCAGCTGACGAACAGCACTTCATCAAGCAC 2685 Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656 || ||||||||||||| || || || || ||| ||||| || || | ||| Sbjct 2684 GTTCTGGCATTCTTTGCCGCTAGCGACGGCATTGTGGCGGAGAACTTGGCCGGTCGCTTC 2625 Query 25657 ACCAGGGAAGTGCA-GTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGA 25715 | | || ||||| || | | |||| || ||||| || ||||| || |||||||| Sbjct 2624 ATGAAAGAGGTGCAAGTGCCCG-AGGCACGATGCTTCTATGGCTTCCAAATCGCCATCGA 2566 Query 25716 AAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCGA 25775 || | ||||| ||| || | || ||| || ||| | | ||| || ||| Sbjct 2565 GAACATCCACTCAGAGACCTACTCGCTCCTCCTGGATACCTACGTCAAGGACCCCGTCGA 2506 Query 25776 GAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTG 25835 || | | || || ||||||||| | ||| | |||| |||||| ||| Sbjct 2505 GAAGGCCCATCTCTTCAATGCCATCGAAACGGTGCCCTCGGTGAAGAAGAAGGCCGAGTG 2446 Query 25836 GGCCATGAAGTGGATCAACAGCCAGAGCGCT---ACGTTTGGCGAGCGGCTGGTAGCCTT 25892 ||| ||| |||||||||| || ||| | || |||| |||||| || || | || Sbjct 2445 GGCGATGCGATGGATCAACAAGGAGGGCGTTGACACCTTTGCCGAGCGCCTCGTTGGGTT 2386 Query 25893 TGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCA 25952 ||| || || ||||||||||| ||| || || || ||||||||||||||||| | Sbjct 2385 TGCCGCAGTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGTTCCATCTTCTGGCTCAAGAA 2326 Query 25953 GAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTC 26011 | | || | ||||||||| || ||| |||||||||||||||||| | |||||||| | Sbjct 2325 -ACGCGGTCTCATGCCCGGCCTCGCCTTCTCCAACGAGCTCATCAGCCGCGACGAGGGCC 2267 Query 26012 TCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAG 26071 | ||| || ||||||||||| || | |||| |||| | |||| || || || Sbjct 2266 TGCACGCCGAGTTTGCCTGCCT-CT-TGTACGGTATGCTTG-TGAACAAGCC--GTCGAG 2212 Query 26072 AGACCGTCTA---CAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTT 26121 ||| | | ||| ||| || ||||| || |||||||||||||||||| Sbjct 2211 CGACGTGCCAAGGCAG-ATCGTCCTCGAGGCCGTCGAGATCGAGAAGGAGTTT 2160 >seq77627 Length=171561 Score = 114 bits (126), Expect = 2e-20 Identities = 149/203 (73%), Gaps = 5/203 (2%) Strand=Plus/Plus Query 25817 TCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAG---CGCTACGTTTG 25873 |||||| |||||| |||||| ||| ||||||||||| || | || || |||| Sbjct 136836 TCAAGAAGAAGGCCGAGTGGGCAATGCGGTGGATCAACAAGGAGGGTCTCGACACCTTTG 136895 Query 25874 GCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGG 25933 |||||| || || | || || || || ||||| ||||| ||| || || || Sbjct 136896 CCGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGTATCTTCTTCTCGGGCTCCTTCTGTT 136955 Query 25934 CCATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 ||||||||||||||||| | | | || | ||||||||| || ||| |||||||||||| Sbjct 136956 CCATCTTCTGGCTCAAG-AAACGCGGTCTCATGCCCGGCCTCGCCTTCTCCAACGAGCTC 137014 Query 25993 ATCAGCAGGGACGAGGGTCTCCA 26015 |||||| | |||||||| || || Sbjct 137015 ATCAGCCGCGACGAGGGCCTGCA 137037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 927927008453120