Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq78026 118 7e-21 seq67786 114 8e-20 seq77000 105 4e-17 seq74158 95.1 8e-14 seq70309 95.1 8e-14 seq68235 87.8 1e-11 seq64244 87.8 1e-11 >seq78026 Length=24050 Score = 118 bits (130), Expect = 7e-21 Identities = 200/290 (69%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 877880 TGGAAAGGAACTGAAGTTGCTGTAAAAGTAATTTCTTCGCAAAATATCACTAAAAACATG 877939 ||||| || || || || || || || || || | | | || ||||| ||| ||||| Sbjct 23175 TGGAAGGGCACCGAGGTGGCCGTCAAGGTCATGACCGCCGAGAAGATCACGAAAGACATG 23234 Query 877940 GAACAAGCCTTTTACGATGAAATTCGTGTCATGACTAAACTCCGTCATCCAAATGTTGTG 877999 || | ||| | || || | || |||||||| ||||||||||| || || ||| Sbjct 23235 GAGAAGAACTTCCAGGACGAGGTGCGCGTCATGACCTCGCTCCGTCATCCGAACGTGGTG 23294 Query 878000 TTATTTATGGCTGCTTGCACAAAACCTCCCAAAATGTGTATTATCATGGAGCACATGTCA 878059 | || ||||| || ||||| || || ||||| ||||| || | |||||| |||||| Sbjct 23295 CTCTTCATGGCCGCCTGCACCAAGCCGCCCAAGATGTGCATCGTGATGGAGTTCATGTCG 23354 Query 878060 CTTGGGTCAATGTATGAACTTTTAGAAAATGAACTTATTCCAGATATTCCTCTAGAACTT 878119 || ||||| ||| || || | | || || || |||||||| ||||| | | || Sbjct 23355 CTCGGGTCGCTGTTCGACCTGCTGCACAACGAGCTCATTCCAGAGATTCCGTTCGTGCTC 23414 Query 878120 AAAATTAAGATGGCATATCAAGCATCTAAAGGAATGCATTTCTTACACTC 878169 || |||||||| || || || || || || ||||| ||| | ||||| Sbjct 23415 AAGGCCAAGATGGCCTACCAGGCCTCCAAGGGCATGCACTTCCTCCACTC 23464 >seq67786 Length=2818 Score = 114 bits (126), Expect = 8e-20 Identities = 255/383 (67%), Gaps = 0/383 (0%) Strand=Plus/Plus Query 877880 TGGAAAGGAACTGAAGTTGCTGTAAAAGTAATTTCTTCGCAAAATATCACTAAAAACATG 877939 ||||| || || || || || || || || || | | | || ||||| || ||||| Sbjct 932 TGGAAGGGCACCGAGGTGGCCGTCAAGGTCATGGCGGCCGAGAAGATCACCAAGGACATG 991 Query 877940 GAACAAGCCTTTTACGATGAAATTCGTGTCATGACTAAACTCCGTCATCCAAATGTTGTG 877999 || | ||| | || || | || || ||||| || || || || || || || Sbjct 992 GAGAAGAGCTTCCAGGACGAGGTGCGCGTGATGACGTCGCTGCGCCACCCGAACGTCGTC 1051 Query 878000 TTATTTATGGCTGCTTGCACAAAACCTCCCAAAATGTGTATTATCATGGAGCACATGTCA 878059 | || ||||| || | || || || ||||| ||||| || |||||||| ||| | Sbjct 1052 CTCTTCATGGCAGCCTCGACCAAGCCGCCCAAGATGTGCATCGTCATGGAGTTTATGGCT 1111 Query 878060 CTTGGGTCAATGTATGAACTTTTAGAAAATGAACTTATTCCAGATATTCCTCTAGAACTT 878119 || || || | || || || | | ||||| || ||||| || ||||| | | || Sbjct 1112 CTCGGCTCCCTCTACGACCTCCTCCACAATGAGCTCATTCCCGAGATTCCGTTCGTGCTC 1171 Query 878120 AAAATTAAGATGGCATATCAAGCATCTAAAGGAATGCATTTCTTACACTCATCCGGCATT 878179 || |||||||| || || || || || || ||||| ||| | ||||| || ||||| Sbjct 1172 AAGGCCAAGATGGCCTACCAGGCGTCCAAGGGCATGCACTTCCTCCACTCGTCGGGCATC 1231 Query 878180 GTCCATAGAGATCTCAAGTCTCTTAATCTACTACTAGATTCTAAATGGAATGTTAAAGTG 878239 ||||| | ||||||||||| || || || || || || || ||||| || || ||| Sbjct 1232 GTCCACCGCGATCTCAAGTCGCTCAACCTGCTGCTGGACAACAAGTGGAACGTCAAGGTG 1291 Query 878240 AGTGATTTTGGTTTGACAAAGTT 878262 || ||||| | || ||||| Sbjct 1292 TCCGACTTTGGCCTCACCAAGTT 1314 >seq77000 Length=1533 Score = 105 bits (116), Expect = 4e-17 Identities = 176/256 (69%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 877962 TTCGTGTCATGACTAAACTCCGTCATCCAAATGTTGTGTTATTTATGGCTGCTTGCACAA 878021 |||| || ||||| || || || || ||||| ||| | || ||||| || | || | Sbjct 960 TTCGCGTGATGACGTCGCTTCGCCACCCGAATGTGGTGCTGTTCATGGCCGCGTCGACCA 1019 Query 878022 AACCTCCCAAAATGTGTATTATCATGGAGCACATGTCACTTGGGTCAATGTATGAACTTT 878081 || | ||||| ||||| || |||||||| |||| | || || || | | || || Sbjct 1020 AAGCGCCCAAGATGTGCATCGTCATGGAGTTCATGGCGCTYGGCTCGCTCTTCGACCTGC 1079 Query 878082 TAGAAAATGAACTTATTCCAGATATTCCTCTAGAACTTAAAATTAAGATGGCATATCAAG 878141 | | || || || ||||| || || || | | || || |||||||| || || | Sbjct 1080 TCCACAACGAGCTCATTCCCGACATYCCATTCGCGCTCAAGGCCAAGATGGCCTACCAGG 1139 Query 878142 CATCTAAAGGAATGCATTTCTTACACTCATCCGGCATTGTCCATAGAGATCTCAAGTCTC 878201 | || || || ||||| ||| | ||||| || || || |||||| | ||||||||||| | Sbjct 1140 CGTCCAAGGGCATGCACTTCCTGCACTCGTCGGGTATCGTCCATCGCGATCTCAAGTCGC 1199 Query 878202 TTAATCTACTACTAGA 878217 | || || || || || Sbjct 1200 TCAACCTTCTCCTCGA 1215 >seq74158 Length=4708 Score = 95.1 bits (104), Expect = 8e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 878126 AAGATGGCATATCAAGCATCTAAAGGAATGCATTTCTTACACTCATCCGGCATTGTCCAT 878185 ||| |||| ||||| || || || || ||||| ||||| |||||||||||||| || ||| Sbjct 2304 AAGGTGGCCTATCAGGCGTCAAAGGGCATGCACTTCTTGCACTCATCCGGCATCGTGCAT 2363 Query 878186 AGAGATCTCAAGTCTCTTAATCTACTACTAGATTCTAAATGGAATGTTAAAGTGAGTGAT 878245 | || ||||||||||| || || || || || | || ||||| || || || || Sbjct 2364 CGCGACCTCAAGTCTCTCAACCTCCTCCTTGACGCCAAGTGGAACGTCAAGGTCTCCGAC 2423 Query 878246 TTTGGTTTGACAAAGTT 878262 ||||| |||| ||||| Sbjct 2424 TTTGGCCTGACCAAGTT 2440 >seq70309 Length=4701 Score = 95.1 bits (104), Expect = 8e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 878126 AAGATGGCATATCAAGCATCTAAAGGAATGCATTTCTTACACTCATCCGGCATTGTCCAT 878185 ||| |||| ||||| || || || || ||||| ||||| |||||||||||||| || ||| Sbjct 2405 AAGGTGGCCTATCAGGCGTCAAAGGGCATGCACTTCTTGCACTCATCCGGCATCGTGCAT 2346 Query 878186 AGAGATCTCAAGTCTCTTAATCTACTACTAGATTCTAAATGGAATGTTAAAGTGAGTGAT 878245 | || ||||||||||| || || || || || | || ||||| || || || || Sbjct 2345 CGCGACCTCAAGTCTCTCAACCTCCTCCTTGACGCCAAGTGGAACGTCAAGGTCTCCGAC 2286 Query 878246 TTTGGTTTGACAAAGTT 878262 ||||| |||| ||||| Sbjct 2285 TTTGGCCTGACCAAGTT 2269 >seq68235 Length=899 Score = 87.8 bits (96), Expect = 1e-11 Identities = 214/322 (66%), Gaps = 2/322 (1%) Strand=Plus/Minus Query 879950 GTTGCTGATTTTGGTTTTGCCAGGATTAAAGCGGAAAATACTACTATGACAAGATGTGGT 880009 || ||||| ||||| ||||| |||| || | ||| || | || ||||| | ||||| Sbjct 858 GTGGCTGACTTTGGCTTTGCGCGGATCAAGGAGGAGAACGCCACCATGACTCGCTGTGGC 799 Query 880010 ACTCCTTGTTGGACTGCTCCAGAAATCATTCGTGGTGAAAAATATGACGAAAAGACCGAT 880069 || || || |||||||| || || | || ||||| || || |||||||| | | ||| Sbjct 798 ACGCCCTGCTGGACTGCGCCTGAGGTGATCCGTGGCGAGAAGTATGACGAGCGGGCTGAT 739 Query 880070 GTATTTTCATTTGGTATTGTTATGTGGGAAGTATTAACTGGTAAAGAACCTTTTGCAGGA 880129 | || || || || || ||||||||||||| | || || | |||| ||| ||| Sbjct 738 CTCTTCTCCTTCGGCATCATTATGTGGGAAGTTCTCACCCGTCGTCAGCCTTATGCTGGA 679 Query 880130 TATAATTTTATGAAAGTTTCTCTTGATATCTTGGAAGGCGCAAGACCTCAAATACCTTCT 880189 || || ||| || || |||||| | | || || | ||||| || || | Sbjct 678 CGCAACTTCATGGGCGTCTCGCTTGATGTGCTCGAGGGACGTCGGCCTCAGATCCCCGCC 619 Query 880190 GATTGTCC-CATTAATCTAAAGAAACTCATTAAAAAGTGTTGGCACTCAAATGCGAACAA 880248 || || || || | | ||| | |||| || ||||| |||||| ||| | | || Sbjct 618 GACTGCCCTGATCACTTCAAACGCA-TCATGAAGAAGTGCTGGCACGGAAAGCCAGAGAA 560 Query 880249 GAGACCTAGCATGGAAGAAGTG 880270 | | || ||||||||| ||| Sbjct 559 GCGTCCCTCCATGGAAGATGTG 538 >seq64244 Length=4392 Score = 87.8 bits (96), Expect = 1e-11 Identities = 214/322 (66%), Gaps = 2/322 (1%) Strand=Plus/Plus Query 879950 GTTGCTGATTTTGGTTTTGCCAGGATTAAAGCGGAAAATACTACTATGACAAGATGTGGT 880009 || ||||| ||||| ||||| |||| || | ||| || | || ||||| | ||||| Sbjct 42 GTGGCTGACTTTGGCTTTGCGCGGATCAAGGAGGAGAACGCCACCATGACTCGCTGTGGC 101 Query 880010 ACTCCTTGTTGGACTGCTCCAGAAATCATTCGTGGTGAAAAATATGACGAAAAGACCGAT 880069 || || || |||||||| || || | || ||||| || || |||||||| | | ||| Sbjct 102 ACGCCCTGCTGGACTGCGCCTGAGGTGATCCGTGGCGAGAAGTATGACGAGCGGGCTGAT 161 Query 880070 GTATTTTCATTTGGTATTGTTATGTGGGAAGTATTAACTGGTAAAGAACCTTTTGCAGGA 880129 | || || || || || ||||||||||||| | || || | |||| ||| ||| Sbjct 162 CTCTTCTCCTTCGGCATCATTATGTGGGAAGTTCTCACCCGTCGTCAGCCTTATGCTGGA 221 Query 880130 TATAATTTTATGAAAGTTTCTCTTGATATCTTGGAAGGCGCAAGACCTCAAATACCTTCT 880189 || || ||| || || |||||| | | || || | ||||| || || | Sbjct 222 CGCAACTTCATGGGCGTCTCGCTTGATGTGCTCGAGGGACGTCGGCCTCAGATCCCCGCC 281 Query 880190 GATTGTCC-CATTAATCTAAAGAAACTCATTAAAAAGTGTTGGCACTCAAATGCGAACAA 880248 || || || || | | ||| | |||| || ||||| |||||| ||| | | || Sbjct 282 GACTGCCCTGATCACTTCAAACGCA-TCATGAAGAAGTGCTGGCACGGAAAGCCAGAGAA 340 Query 880249 GAGACCTAGCATGGAAGAAGTG 880270 | | || ||||||||| ||| Sbjct 341 GCGTCCCTCCATGGAAGATGTG 362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3264788447739104