Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq79005 185 1e-41 seq68661 111 2e-19 seq77627 98.7 1e-15 seq71326 82.4 9e-11 >seq79005 Length=17376 Score = 185 bits (204), Expect = 1e-41 Identities = 572/872 (66%), Gaps = 21/872 (2%) Strand=Plus/Minus Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270 ||| ||| ||||| ||||||| || || |||| | ||| ||| |||| | || Sbjct 1545 CCCCCAGCACATGCTCATGCGTGTTGCCGTCGGTCTTCACATGGACAACATCCCCGCCGT 1486 Query 75271 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 | | ||||| |||||| | | || ||| | |||| ||||| ||||| |||||||| Sbjct 1485 CATCGAGACCTACGACTTGCTCTCGCAACAGCTCTTCACCCACGCCACACCGACCCTCTT 1426 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 ||| || || || || | |||||| | || |||||||| || ||| |||||||| Sbjct 1425 CAACGCCGGCACCCCCCGCCCGCAGCTTTCGTCGTGCTTCCTCCTCACCATGAAGGAGGA 1366 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 ||| ||| | |||||||| | || || | | |||| || | ||||| |||| ||||| Sbjct 1365 CTCGATCGAGGGTATCTACGACACGCTCAAGCAGTGCGCCCTCATCTCCAAGTCAGCTGG 1306 Query 75451 GGGTATTGG----GATGCACATC-CATGATGTGAGAGCCAATAAATCTCGT--ATTCGGG 75503 ||||| || | ||| || | || | | ||| | | ||||| ||||| | Sbjct 1305 CGGTATCGGCGTCGCTGCCCACCGCA-----TCCGCGCC--TCCAACTCGTACATTCGCG 1253 Query 75504 GGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 75563 | || || || || | ||| | | || ||||| ||||| | |||| ||| || | Sbjct 1252 GCACCAACGGCACCTCGAACGGTCTCGTCCCGATGCTGCGCGTCTACAACGACACCGCCC 1193 Query 75564 GCTATGTAAATCA-AGCGG-GGC-GTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCAT 75620 |||| || | || |||| ||| |||||||| || | || |||| | || || | Sbjct 1192 GCTACGTCGACCAGGGCGGCGGCAAGCGCAAGGGCGCCTTTGCCATCTATCTCGAGCCGT 1133 Query 75621 GGCATGCCGATATCATGGAGTTCCTTGAG-TTACGACTCAACCAAGGTGACGAAGAGGCT 75679 |||| ||||| ||| | || || | ||| | | || ||||| || | || ||| Sbjct 1132 GGCACGCCGACATCTTTGACTTTTTGGAGCTCAAGA-AGAACCACGGCAAGGAGGAGAAC 1074 Query 75680 CGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAG 75739 || | | || ||||| | ||||||||| || ||||| ||||||||||| || ||| Sbjct 1073 CGCGCTCGCGACCTCTTCTACGGCCTGTGGATCCCCGACCTCTTCATGAAGCGCGTCGAG 1014 Query 75740 GAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTG 75799 || || | ||||| || ||||| || || |||| || || || | ||| || | Sbjct 1013 TCTGGCGGCGACTGGTCGCTCTTCTGCCCCAACGAGGCGCCCGGCCTGTTTGACTCGTGG 954 Query 75800 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACT 75859 || |||||||||||| || || || |||||| | ||| || | Sbjct 953 GGCAAGGAGTTTGAAGAGAAGTATGAGCGCTACGAGCTGGAGGGCCGCGCC-CGCCGGGT 895 Query 75860 GTACCA-GCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACC 75918 | | | ||| || | ||| || || ||| | || |||| |||||||| || || Sbjct 894 GGTCAAGGCCCAGGAGCTCTGGTTTGCGATCCTCGAGTCGCAGATCGAGACTGGCACGCC 835 Query 75919 ATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAAT 75978 || ||||| |||||||| || || |||| ||| ||||| || | |||| || || Sbjct 834 CTACATGCTCTACAAGGACGCCTGCAACAGCAAGTCGAACCAGCAGCACCTGGGCACGAT 775 Query 75979 CAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGT 76038 | || || || || |||||||| | | ||||||| || || ||| || Sbjct 774 CCAGTCGTCGAACCTGTGCACGGAGGTCATCCAGTACACCTCGCCCGACGAAGTGGCCGT 715 Query 76039 TTGCAATTTGGCATCAATCGCCCTTCCAAAGT 76070 ||||| |||| || |||||||| || |||| Sbjct 714 GTGCAACCTGGCCTCGATCGCCCTGCCCAAGT 683 >seq68661 Length=10605 Score = 111 bits (122), Expect = 2e-19 Identities = 167/237 (70%), Gaps = 3/237 (1%) Strand=Plus/Minus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 |||||| |||| || || | | |||||||||| | ||||| ||| |||| | || Sbjct 2486 GCCATCGAAACGGTGCCCTCGGTGAAGAAGAAGGCCGAGTGGGCGATGCGATGGATCAAC 2427 Query 65056 ACAAAGTC---TCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATC 65112 | || | | |||| ||||||||||| ||| |||||| || ||||| ||| Sbjct 2426 AAGGAGGGCGTTGACACCTTTGCCGAGCGCCTCGTTGGGTTTGCCGCAGTCGAGGGCATC 2367 Query 65113 TTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGC 65172 |||||||| || || ||||| | || | ||| | ||||| || ||||||||||| ||| Sbjct 2366 TTCTTCTCGGGCTCCTTCTGTTCCATCTTCTGGCTCAAGAAACGCGGTCTCATGCCCGGC 2307 Query 65173 CTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 || |||||| || || || || ||| || ||||| || ||| ||||||||| Sbjct 2306 CTCGCCTTCTCCAACGAGCTCATCAGCCGCGACGAGGGCCTGCACGCCGAGTTTGCC 2250 >seq77627 Length=171561 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/230 (70%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 64990 TTTGAAGCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGG 65049 ||| | |||||| | || || || | | |||||||||| | ||||||||| ||| Sbjct 136808 TTTAACGCCATCAAGACGGTGCCCTCGGTCAAGAAGAAGGCCGAGTGGGCAATGCGGTGG 136867 Query 65050 TTTGACACAAAG--TCTCG-CTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAG 65106 | ||| || ||||| | |||| |||||||| || | | || || || ||| Sbjct 136868 ATCAACAAGGAGGGTCTCGACACCTTTGCCGAGCGTCTCGTCGGATTCGCCGCCGTCGAG 136927 Query 65107 GGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATG 65166 |||||||||||||| || || ||||| | || | ||| | ||||| || ||||||||| Sbjct 136928 GGTATCTTCTTCTCGGGCTCCTTCTGTTCCATCTTCTGGCTCAAGAAACGCGGTCTCATG 136987 Query 65167 CCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCA 65216 || ||||| |||||| || || || || ||| || ||||| || || Sbjct 136988 CCCGGCCTCGCCTTCTCCAACGAGCTCATCAGCCGCGACGAGGGCCTGCA 137037 Score = 93.3 bits (102), Expect = 5e-14 Identities = 194/289 (67%), Gaps = 0/289 (0%) Strand=Plus/Minus Query 75290 ATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGA 75349 ||||| || | |||||| ||||| || || ||||||||||| ||||| || || | Sbjct 145495 ATGTCTCAGTTTCTGTTCACGCACGCCACCCCGACCCTCTTCAACGCTGGCACGCCCATC 145436 Query 75350 CCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTAT 75409 ||||||||| ||||||||| || | | | ||||||||||| ||| |||| ||||| Sbjct 145435 CCGCAGATGAGCAGTTGCTTTCTCTTGGATATGAAGGAGGACTCCATCGACGGCATCTAC 145376 Query 75410 GGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATC 75469 | || || | ||| |||| ||||| ||| | || || || || || || | | Sbjct 145375 GAGACCCTCAAACGGTGCGCGCTCATCTCCAAGAGCGCGGGAGGCATCGGCGTGGCCGTG 145316 Query 75470 CATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATT 75529 || | | | || || || ||||| || || || || || |||| | Sbjct 145315 CACAAGATCCGCGCGGCCAACTCCTACATTCGCGGCACCAACGGGACCTCCAATGGCCTC 145256 Query 75530 ATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAG 75578 || || ||||| ||||| | |||| ||| || ||||| || |||||| Sbjct 145255 ATCCCCATGCTGCGCGTCTACAACGACACTGCCCGCTACGTCGATCAAG 145207 >seq71326 Length=3810 Score = 82.4 bits (90), Expect = 9e-11 Identities = 114/160 (71%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 65069 CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCAT 65128 ||||| ||||||| || | | || || || ||||| |||||||||||||| || | Sbjct 2134 CCTTCCCCGAGCGTCTCATCGGCTTCGCCGCGGTCGAGGGCATCTTCTTCTCCGGCTCTT 2193 Query 65129 TCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATG 65188 ||||| | || | ||| | |||||||| || || ||||| || || |||| || | Sbjct 2194 TCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCCGGTCTTGCCTTCAGCAACG 2253 Query 65189 AACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 | ||||| ||| || |||||||| ||| || ||||| Sbjct 2254 AGCTTATCAGCCGCGACGAGGGTCTGCACTGCGACTTTGC 2293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595980129578240