Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq78338 118 3e-21 seq72545 118 3e-21 seq66411 118 3e-21 seq76232 107 6e-18 >seq78338 Length=19025 Score = 118 bits (130), Expect = 3e-21 Identities = 185/260 (71%), Gaps = 6/260 (2%) Strand=Plus/Plus Query 302620 GTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCT 302679 || || ||||| || || || ||||| ||||||||||||| || |||||||| | ||| Sbjct 15945 GTCTTCACAGCCGTGTCGATAAGACCTTCACGACCACCCATGGCGTGGAAGAAGAACTCC 16004 Query 302680 TCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCT-CGGGCGAATC 302738 | |||| || || | | | ||| |||| ||||| || || | || ||||| || Sbjct 16005 TGCGGTGTCAGACCGCGCAGGTACGAGTTCTCGACGAAGCCTCGTGACTCCGGGCCAA-A 16063 Query 302739 GTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCC 302798 |||| |||| |||||| ||||| || | || | ||| | | || || ||||| || Sbjct 16064 GTCGTCCTTGACAAAGTGCGGCAGCGTGCGGTCCCGGAAGCAGAAGGGAATGCGCTTGCC 16123 Query 302799 ATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTG--CCC 302856 || ||||||||||| |||| ||| | | || |||||| || || ||| | | ||| Sbjct 16124 CTCGACGTTCTGCTGGCCCACGCAGGCGAGCACCTGCGAGATGTT--GATCGCCGAACCC 16181 Query 302857 TTGGAGCCAGCATTTACCAT 302876 |||||||| ||| | ||||| Sbjct 16182 TTGGAGCCGGCAATCACCAT 16201 >seq72545 Length=6163 Score = 118 bits (130), Expect = 3e-21 Identities = 185/260 (71%), Gaps = 6/260 (2%) Strand=Plus/Minus Query 302620 GTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCT 302679 || || ||||| || || || ||||| ||||||||||||| || |||||||| | ||| Sbjct 3887 GTCTTCACAGCCGTGTCGATAAGACCTTCACGACCACCCATGGCGTGGAAGAAGAACTCC 3828 Query 302680 TCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTC-GGGCGAATC 302738 | |||| || || | | | ||| |||| ||||| || || | ||| |||| || Sbjct 3827 TGCGGTGTCAGACCGCGCAGGTACGAGTTCTCGACGAAGCCTCGTGACTCCGGGCCAAA- 3769 Query 302739 GTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCC 302798 |||| |||| |||||| ||||| || | || | ||| | | || || ||||| || Sbjct 3768 GTCGTCCTTGACAAAGTGCGGCAGCGTGCGGTCCCGGAAGCAGAAGGGAATGCGCTTGCC 3709 Query 302799 ATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTG--CCC 302856 || ||||||||||| |||| ||| | | || |||||| || || | || | | ||| Sbjct 3708 CTCGACGTTCTGCTGGCCCACGCAGGCGAGCACCTGCGAGATGTTGA--TCGCCGAACCC 3651 Query 302857 TTGGAGCCAGCATTTACCAT 302876 |||||||| ||| | ||||| Sbjct 3650 TTGGAGCCGGCAATCACCAT 3631 >seq66411 Length=5733 Score = 118 bits (130), Expect = 3e-21 Identities = 185/260 (71%), Gaps = 6/260 (2%) Strand=Plus/Minus Query 302620 GTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCT 302679 || || ||||| || || || ||||| ||||||||||||| || |||||||| | ||| Sbjct 3457 GTCTTCACAGCCGTGTCGATAAGACCTTCACGACCACCCATGGCGTGGAAGAAGAACTCC 3398 Query 302680 TCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTC-GGGCGAATC 302738 | |||| || || | | | ||| |||| ||||| || || | ||| |||| || Sbjct 3397 TGCGGTGTCAGACCGCGCAGGTACGAGTTCTCGACGAAGCCTCGTGACTCCGGGCCAAA- 3339 Query 302739 GTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCC 302798 |||| |||| |||||| ||||| || | || | ||| | | || || ||||| || Sbjct 3338 GTCGTCCTTGACAAAGTGCGGCAGCGTGCGGTCCCGGAAGCAGAAGGGAATGCGCTTGCC 3279 Query 302799 ATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTG--CCC 302856 || ||||||||||| |||| ||| | | || |||||| || || | || | | ||| Sbjct 3278 CTCGACGTTCTGCTGGCCCACGCAGGCGAGCACCTGCGAGATGTTGA--TCGCCGAACCC 3221 Query 302857 TTGGAGCCAGCATTTACCAT 302876 |||||||| ||| | ||||| Sbjct 3220 TTGGAGCCGGCAATCACCAT 3201 >seq76232 Length=19205 Score = 107 bits (118), Expect = 6e-18 Identities = 178/257 (69%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462 |||||| | || ||| || || ||||| || | ||| || || ||| || | || Sbjct 7642 GGCGATCATGCCGCACAGATCGCATACATGCACTCGGTAGGCGTCCGATTGATCGAAGAG 7701 Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522 ||| ||||| ||| | | || ||||| || ||||| || || |||||||| || || Sbjct 7702 CCGCTCCTTGAGGAACTGGGCAGCGCCGTGGGAGATCATGCAGTCGCGCTCCATCTCTCC 7761 Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCAT 251582 ||| |||||||||||||| || | | |||||| | ||||| || ||||| | || Sbjct 7762 GAATCGAAGACCACCATCACGCGAACGACCCTCTACGGGCTGCCGGGTGAGGATCTGCAC 7821 Query 251583 AGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAA 251642 || ||| | || || |||||||| ||||| ||||| || ||||||||| | Sbjct 7822 GGGGCCGCGCGCACGCGAGTGGATCTTATCATCCACCATGTGCTTCAGTCGCTGGTAGTA 7881 Query 251643 TGCGGGACCGATGAAGA 251659 | || |||||||||| Sbjct 7882 GGTCGGTCCGATGAAGA 7898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470326939455176