Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq73052 86.0 5e-12 seq71209 86.0 5e-12 seq71208 86.0 5e-12 >seq73052 Length=1566 Score = 86.0 bits (94), Expect = 5e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 107171 GGACTGCACGGCTTCCACGTGCACGAATTTGGCGACACCAGCAACGGCTGTACGTCCGCC 107230 |||| ||||| |||||||||||||| ||||| |||| || ||||||||| | ||| Sbjct 82 GGACCTCACGGTTTCCACGTGCACGAGTTTGGTGACAACACCAACGGCTGCGTGAGCGCG 141 Query 107231 GGTGAACACTTCAATCCCACATACCAA-AATCACGGTGCGCCCGACGCCGTAGAAAGGCA 107289 || | |||||||| ||| | |||| || ||||||| || || | | ||| | || Sbjct 142 GGAGGTCACTTCAA-CCCCTTTGCCAAGAAGCACGGTGGCCCTGAAGATGAAGAGCGCCA 200 Query 107290 CGTCGGCGATCTGGGCAACGT 107310 ||| |||||||| ||||| || Sbjct 201 CGTGGGCGATCTTGGCAATGT 221 >seq71209 Length=2585 Score = 86.0 bits (94), Expect = 5e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 107171 GGACTGCACGGCTTCCACGTGCACGAATTTGGCGACACCAGCAACGGCTGTACGTCCGCC 107230 |||| ||||| |||||||||||||| ||||| |||| || ||||||||| | ||| Sbjct 1936 GGACCTCACGGTTTCCACGTGCACGAGTTTGGTGACAACACCAACGGCTGCGTGAGCGCG 1995 Query 107231 GGTGAACACTTCAATCCCACATACCAA-AATCACGGTGCGCCCGACGCCGTAGAAAGGCA 107289 || | |||||||| ||| | |||| || ||||||| || || | | ||| | || Sbjct 1996 GGAGGTCACTTCAA-CCCCTTTGCCAAGAAGCACGGTGGCCCTGAAGATGAAGAGCGCCA 2054 Query 107290 CGTCGGCGATCTGGGCAACGT 107310 ||| |||||||| ||||| || Sbjct 2055 CGTGGGCGATCTTGGCAATGT 2075 >seq71208 Length=2605 Score = 86.0 bits (94), Expect = 5e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 107171 GGACTGCACGGCTTCCACGTGCACGAATTTGGCGACACCAGCAACGGCTGTACGTCCGCC 107230 |||| ||||| |||||||||||||| ||||| |||| || ||||||||| | ||| Sbjct 1956 GGACCTCACGGTTTCCACGTGCACGAGTTTGGTGACAACACCAACGGCTGCGTGAGCGCG 2015 Query 107231 GGTGAACACTTCAATCCCACATACCAA-AATCACGGTGCGCCCGACGCCGTAGAAAGGCA 107289 || | |||||||| ||| | |||| || ||||||| || || | | ||| | || Sbjct 2016 GGAGGTCACTTCAA-CCCCTTTGCCAAGAAGCACGGTGGCCCTGAAGATGAAGAGCGCCA 2074 Query 107290 CGTCGGCGATCTGGGCAACGT 107310 ||| |||||||| ||||| || Sbjct 2075 CGTGGGCGATCTTGGCAATGT 2095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412443869434664