Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= NC_023006.1 Length=43564 Score E Sequences producing significant alignments: (Bits) Value seq71883 86.0 2e-12 seq70080 86.0 2e-12 >seq71883 Length=11894 Score = 86.0 bits (94), Expect = 2e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 37150 CACTTCGGCGCAAACGTGCTGGTTACCCGCAAAGGTGCTGTTCGGGCCCGCGAGGGCGAC 37209 ||||| ||| ||||| | || || ||||| || || || | |||||| ||||||| Sbjct 5355 CACTTTGGCAAGGACGTGTTCGTGACGCGCAAGGGAGCGGTGAGCGCCCGCAAGGGCGAG 5414 Query 37210 CTGGGCATCATCCCTGGCTCGATGGGTGCGAAGTCATTCATCGTTCGCGG 37259 |||||||||||||||||||||||||| || || | |||||| ||||| Sbjct 5415 CTGGGCATCATCCCTGGCTCGATGGGCGCCAAAAGCTACATCGTCCGCGG 5464 Score = 84.2 bits (92), Expect = 6e-12 Identities = 157/227 (69%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 37288 TGCAGCCACGGTGCCGGTCGAATG-ATGAGC-CGGGCCGAAGCAAAACGCCGGTTCACAG 37345 ||||||||||| ||||| || || || || |||| | ||| || || | ||||| Sbjct 5546 TGCAGCCACGGAGCCGGGCGCGTGCATTCGCGCGGGGC--AGCTAAGCGGCTCTTCACGC 5603 Query 37346 TCGAGGATCATGAGGCGGCCACCAAAGGTATCGAGTGCCGCAAAGATGCCGAAGTGATCG 37405 ||||||| || | | ||| || ||||||| || | || ||||| | | | Sbjct 5604 TCGAGGACCACCTGCATGACACGCGTGGCGTCGAGTGTCGACATGACGCCGACCTCCTGG 5663 Query 37406 ACGAGACGCCAGCGGCTTACAAGGACATCGATGCGGTCATGGCCGCGCAATCCGCCCTGG 37465 |||| ||||| || |||||||||||||| || |||||| || ||| ||| || | Sbjct 5664 ACGAAACGCCTCGAGCGTACAAGGACATCGACGCCGTCATGCAGGCCCAAACCGATCTCG 5723 Query 37466 TGGACATCGTGCACACGCTGCGCCAAGTCGTTTGCGTGAAGGGTTGA 37512 | || |||||||||| || || ||| ||||||| ||||| ||| Sbjct 5724 TCGAAGTCGTGCACACCCTCAAGCAGGTCCTTTGCGTCAAGGGCTGA 5770 >seq70080 Length=5995 Score = 86.0 bits (94), Expect = 2e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 37150 CACTTCGGCGCAAACGTGCTGGTTACCCGCAAAGGTGCTGTTCGGGCCCGCGAGGGCGAC 37209 ||||| ||| ||||| | || || ||||| || || || | |||||| ||||||| Sbjct 641 CACTTTGGCAAGGACGTGTTCGTGACGCGCAAGGGAGCGGTGAGCGCCCGCAAGGGCGAG 582 Query 37210 CTGGGCATCATCCCTGGCTCGATGGGTGCGAAGTCATTCATCGTTCGCGG 37259 |||||||||||||||||||||||||| || || | |||||| ||||| Sbjct 581 CTGGGCATCATCCCTGGCTCGATGGGCGCCAAAAGCTACATCGTCCGCGG 532 Score = 84.2 bits (92), Expect = 6e-12 Identities = 157/227 (69%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 37288 TGCAGCCACGGTGCCGGTCGAATG-ATGAGC-CGGGCCGAAGCAAAACGCCGGTTCACAG 37345 ||||||||||| ||||| || || || || |||| | ||| || || | ||||| Sbjct 450 TGCAGCCACGGAGCCGGGCGCGTGCATTCGCGCGGGGC--AGCTAAGCGGCTCTTCACGC 393 Query 37346 TCGAGGATCATGAGGCGGCCACCAAAGGTATCGAGTGCCGCAAAGATGCCGAAGTGATCG 37405 ||||||| || | | ||| || ||||||| || | || ||||| | | | Sbjct 392 TCGAGGACCACCTGCATGACACGCGTGGCGTCGAGTGTCGACATGACGCCGACCTCCTGG 333 Query 37406 ACGAGACGCCAGCGGCTTACAAGGACATCGATGCGGTCATGGCCGCGCAATCCGCCCTGG 37465 |||| ||||| || |||||||||||||| || |||||| || ||| ||| || | Sbjct 332 ACGAAACGCCTCGAGCGTACAAGGACATCGACGCCGTCATGCAGGCCCAAACCGATCTCG 273 Query 37466 TGGACATCGTGCACACGCTGCGCCAAGTCGTTTGCGTGAAGGGTTGA 37512 | || |||||||||| || || ||| ||||||| ||||| ||| Sbjct 272 TCGAGGTCGTGCACACCCTCAAGCAGGTCCTTTGCGTCAAGGGCTGA 226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139152455556576