Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq66934 95.1 1e-14 seq69527 82.4 6e-11 >seq66934 Length=1683 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || ||||| || ||||| |||| ||| | || Sbjct 86 ATGCAGATCTTCGTCAAGACGCTGACTGGCAAGACTATTACGCTCGAGGTCGAGTCGAGC 145 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | || || |||||||| || || || ||| | ||| ||| ||| Sbjct 146 GATACCATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 205 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| || || ||||| ||||||| | || |||| ||||||||| Sbjct 206 CAGCGCCTCATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTGGCCGACTACAAC 265 Query 107736 ATTCAAAAGGAGTCTAC 107752 || || |||||||| || Sbjct 266 ATCCAGAAGGAGTCGAC 282 >seq69527 Length=538 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || ||||| || ||||| |||| ||| | || Sbjct 98 ATGCAGATCTTCGTCAAGACGCTGACTGGCAAGACTATTACGCTCGAGGTTGAGTCCAGC 157 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | || || |||||||| || || || ||| | || || ||| Sbjct 158 GATACCATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAG 217 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||| ||||||| | || | || ||||||||| Sbjct 218 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCTGACTACAAC 277 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| ||||| Sbjct 278 ATNCAGAAGGAGTCCACCCTCCACTTGGTG 307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398492523088072