Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq79005 113 4e-20 seq66934 98.7 9e-16 seq69527 96.9 3e-15 seq79045 93.3 4e-14 seq28013 87.8 2e-12 seq78417 84.2 2e-11 >seq79005 Length=17376 Score = 113 bits (124), Expect = 4e-20 Identities = 365/565 (65%), Gaps = 9/565 (2%) Strand=Plus/Plus Query 147456 CACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGAT 147515 || |||||| || ||||| ||||| |||||| || |||| | ||||||| | || Sbjct 690 CAGGGCGATCGAGGCCAGGTTGCACACGGCCACTTCGTCGGGCGAGGTGTACTGGATGAC 749 Query 147516 TTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATT 147575 || | ||||||||| | | || |||| | ||||| || || | || Sbjct 750 CTCCGTGCACAGGTTCGACGACTGGATCGTGCCCAGGTGCTGCTGGTTCGACTTGCTGTT 809 Query 147576 GCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT--- 147632 ||| ||||| ||| |||||||||| || ||| ||||||| |||| || | ||| Sbjct 810 GCAGGCGTCCTTGTAGAGCATGTAGGGCGTGCCAGTCTCGATCTGCGACTCGAGGATCGC 869 Query 147633 AAACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCG 147692 ||||| || ||||| || ||| | | || ||||||||| ||||| || Sbjct 870 AAACCAGAGC---TCCTGGGCCTTGACCACCCGGCGGGCGCGGCCCTCCAGCTCGTAGCG 926 Query 147693 CTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGG 147752 ||| ||| | |||||||| | ||| | | || |||||||| || | || Sbjct 927 CTCATACTTCTCTTCAAACTCCTTGCCCCACGAGTCAAACAGGCCGGGCGCCTCGTTGGG 986 Query 147753 ACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCA 147812 || | |||||||| | || | | | ||||| ||| || || || || | ||| Sbjct 987 GCAGAAGAGCGACCAGTCGCCGCCAGACTCGACGCGCTTCATGAAGAGGTCGGGGATCCA 1046 Query 147813 CAGCGCGTACATAAGATCGCGCGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAATT 147872 ||| |||| | || ||||| || | ||||| ||| ||| || | | Sbjct 1047 CAGGCCGTAGAAGAGGTCGCGAGCGCGGTTCTCCTCCTTGCCGTGGTTCTTCTTGAGCTC 1106 Query 147873 AAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACG 147932 | | | | |||||||||||||||| || || | |||| ||| | || || || || Sbjct 1107 CAAAAAGTCAAAGATGTCGGCGTGCCACGGCTCGAGATAGATGGCAAAGGCGCCCTTGCG 1166 Query 147933 CTTTCCGC---CCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTC 147989 ||| |||| |||||||||| | ||| | ||| ||| | ||||||| ||| || | Sbjct 1167 CTTGCCGCCGCCCTGGTCGACGTAGCGGGCGGTGTCGTTGTAGACGCGCAGCATCGGGAC 1226 Query 147990 CAGGCCGCTCGCAGTGCCGTTGGTG 148014 || ||| ||| |||||||||||| Sbjct 1227 GAGACCGTTCGAGGTGCCGTTGGTG 1251 >seq66934 Length=1683 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| || || || || |||||||| || || | | Sbjct 279 GACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCA 220 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| || || || || ||||| || || || || ||||| |||| Sbjct 219 AAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTCACG 160 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | |||||| ||| ||| || |||| ||| | || || |||||||| || || Sbjct 159 TTCTCGATGGTATCGCTCGACTCGACCTCGAGCGTAATAGTCTTGCCAGTCAGCGTCTTG 100 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 99 ACGAAGATCTGCAT 86 >seq69527 Length=538 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | ||| | ||||| || | | | ||||| || || ||||||||||| | || Sbjct 319 ACGGAGGCGAAGCACCAAGTGGAGGGTGGACTCCTTCTGNATGTTGTAGTCAGCGAGCGT 260 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || |||||||| || |||| |||| || ||||| || || ||||| ||||| Sbjct 259 GCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGGGATGCC 200 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || ||||| |||| | || | |||||| | | ||| || |||| Sbjct 199 CTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCGATGGTATCGCTGGACTCAACCTCGAG 140 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||| | || || |||||||| || || | ||| ||||||||| Sbjct 139 CGTAATAGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCATG 97 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| || ||| || || || ||||| || |||| Sbjct 519 GACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCG 460 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| || || ||||| || || || || || || || || |||| Sbjct 459 AAGATGAGGCGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTTCTGCTTCACG 400 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || |||| || ||| || |||| ||| | ||| ||||| || || || || Sbjct 399 TTCTCGATCGTGTCGGACGACTCGACCTCGAGCGTAATCGTCTTACCCGTAAGGGTCTTG 340 Query 132110 ATGAAAATCTGCATG 132124 | ||| ||||||||| Sbjct 339 ACGAAGATCTGCATG 325 >seq79045 Length=6779 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| || ||| || || |||||||| || || | Sbjct 3237 GACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCG 3296 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| || || || || ||||| || || || || || || |||| Sbjct 3297 AAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACG 3356 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || |||| || ||| || |||| ||| | ||| ||||| || || ||||| Sbjct 3357 TTCTCGATCGTGTCGGACGACTCTACCTCGAGCGTAATCGTCTTACCCGTAAGGGTTTTC 3416 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 3417 ACGAAGATCTGCAT 3430 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| || |||||| || |||||||| || || | Sbjct 3465 GACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGACCGTCCTCGAGCTGCTTGCCAGCG 3524 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| || || ||||| || || || || || || || || |||| Sbjct 3525 AAGATGAGGCGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTTCTGCTTCACG 3584 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | | ||| || |||| ||| | || || || |||||||| || Sbjct 3585 TTCTCAATGGTGTCCGAGGACTCGACCTCGAGCGTAATGGTCTTGCCGGTCAGAGTCTTG 3644 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 3645 ACGAAGATCTGCAT 3658 >seq28013 Length=187 Score = 87.8 bits (96), Expect = 2e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 131936 TTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGATT 131995 || || |||||||||||| || |||||| || |||||||| || |||| |||| Sbjct 2 TTCTGGATGTTGTAGTCGGCCAAGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATG 61 Query 131996 AGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTTCC 132055 |||||||| || || || || || || || || || || || || |||| | || Sbjct 62 AGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCG 121 Query 132056 ACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAA 132115 | || ||| ||| ||| || |||| ||| | ||| ||||| || || || || | ||| Sbjct 122 ATGGTGTCGCTCGACTCGACCTCGAGCGTGATCGTCTTACCCGTAAGGGTCTTGACGAAG 181 Query 132116 ATCTGC 132121 |||||| Sbjct 182 ATCTGC 187 >seq78417 Length=4549 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| || || || || |||||||| || || | | Sbjct 771 GACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCA 830 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| || || || || ||||| || || || || || || |||| Sbjct 831 AAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACG 890 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || ||| ||| ||| || |||| ||| | ||| || || || || || || Sbjct 891 TTCTCGATCGTGTCGCTCGACTCAACCTCGAGCGTGATCGTCTTTCCCGTAAGGGTCTTG 950 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 951 ACGAAGATCTGCAT 964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476140260473280