Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq68661 150 2e-31 >seq68661 Length=10605 Score = 150 bits (166), Expect = 2e-31 Identities = 369/559 (66%), Gaps = 8/559 (1%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||| || || || |||||||| || | || || | ||||| || || | ||| Sbjct 2247 GCAGGCAAACTCGGCGTGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGCGAG 2306 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 || ||||| ||||| || || |||||||| || |||| | || || || || ||||| Sbjct 2307 GCCGGGCATGAGACCGCGTTTCTTGAGCCAGAAGATGGAACAGAAGGAGCCCGAGAAGAA 2366 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGT-------ATCAT 39788 |||||| || ||||| ||||| |||| || | ||| | || ||| || | Sbjct 2367 GATGCCCTCGACTGCGGCAAACCCAACGAGGCGCTCGGC-AAAGGTGTCAACGCCCTCCT 2425 Query 39789 TATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAG 39848 | | ||||| | ||||| || || |||||||| || | |||| ||||| || | Sbjct 2426 TGTTGATCCATCGCATCGCCCACTCGGCCTTCTTCTTCACCGAGGGCACCGTTTCGATGG 2485 Query 39849 CATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTAT 39908 |||| ||||||| || || | || || || || ||||| | | || | Sbjct 2486 CATTGAAGAGATGGGCCTTCTCGACGGGGTCCTTGACGTAGGTATCCAGGAGGAGCGAGT 2545 Query 39909 ACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAG 39968 | | ||||| |||||||| || || || || || || || || || |||| ||| || | Sbjct 2546 AGGTCTCTGAGTGGATGTTCTCGATGGCGATTTGGAAGCCATAGAAGCATCGTGCCTCGG 2605 Query 39969 TAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAG 40028 | ||| |||||| || | | ||||| || || ||| || || || |||| Sbjct 2606 GCACTTGCACCTCTTTCATGAAGCGACCGGCCAAGTTCTCCGCCACAATGCCGTCGCTAG 2665 Query 40029 CGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCC 40088 ||||||| ||||||| || || || || || | | ||| || | || | | || Sbjct 2666 CGGCAAAGAATGCCAGAACGTGCTTGATGAAGTGCTGTTCGTCAGCTGAGAGAGATTGCC 2725 Query 40089 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCT 40148 ||| || || || | | ||| || || || |||||||| || || ||||| |||| Sbjct 2726 AGTGCTTCATGTCGTCGCCGAGATCGACCTCCTCGGCTGTCCAGAAGGAGGCCTCGGCCT 2785 Query 40149 TTTTGTACATGTTCCATAT 40167 | |||||||| | ||| || Sbjct 2786 TCTTGTACATCTCCCAGAT 2804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686230065414720