Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq77962 111 1e-19 seq28013 93.3 4e-14 seq24034 82.4 6e-11 >seq77962 Length=8127 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| ||||||| || | || | || | || || || || || || ||||||||| Sbjct 6863 GCCGCCGCGCAGGCGAAGGACGAGGTGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGC 6804 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 || | | || |||| || ||||| || |||||| ||||||| ||||| || ||||| || Sbjct 6803 CAGGGTACGGCCGTCCTCAAGCTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCCGGGGG 6744 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | |||||| ||||| ||||| | |||| | | || | ||||| | | || || Sbjct 6743 AATACCCTCCTTATCCTGAATCTTCTGCTTCACGTTCTCGATGGTGTCCGACGACTCGAC 6684 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || ||||| |||| || ||||||| || || || |||||||||||| Sbjct 6683 CTCGAGAGTAATAGTCTTACCCGTCAAGGTCTTGACGAAGATTTGCATA 6635 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 27057 TCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAA 27116 || || || || |||||||| | | | || |||| |||||||| || |||||| | Sbjct 6511 TCCTTCTGGATGTTGTAGTCAGCGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 6452 Query 27117 ATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTT 27176 ||||||||||| || ||||| || | ||||| || || |||||| | || | | | Sbjct 6451 ATGAGACGCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTC 6392 Query 27177 TCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACA 27236 || | |||||| | | || || || || || || | ||||| || || || || || Sbjct 6391 TCAATAGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTGACG 6332 Query 27237 AAGATTTGCAT 27247 ||||||||||| Sbjct 6331 AAGATTTGCAT 6321 >seq28013 Length=187 Score = 93.3 bits (102), Expect = 4e-14 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 27060 TTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATG 27119 || || || ||||||||| || | | || |||| |||||||| || |||||| | ||| Sbjct 2 TTCTGGATGTTGTAGTCGGCCAAGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATG 61 Query 27120 AGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCT 27179 |||||||| || ||||| || | |||||| || || |||||| | |||| | | || Sbjct 62 AGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCG 121 Query 27180 ACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAG 27239 | ||||| | | || || || || || || | || ||||| || || || || ||| Sbjct 122 ATGGTGTCGCTCGACTCGACCTCGAGCGTGATCGTCTTACCCGTAAGGGTCTTGACGAAG 181 Query 27240 ATTTGC 27245 || ||| Sbjct 182 ATCTGC 187 >seq24034 Length=175 Score = 82.4 bits (90), Expect = 6e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 27091 CGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTT 27150 |||| |||||||| || || ||| | ||||||||||| || ||||| || | ||||| | Sbjct 164 CGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCT 105 Query 27151 TATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTA 27210 | || |||||| | |||| | | || | || || ||| || || || || || | Sbjct 104 TGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTATCGCTGGACTCGACCTCGAGCGTAA 45 Query 27211 TAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||| || || ||||| || || || ||||| |||||| Sbjct 44 TAGTCTTACCAGTCAGGGTCTTGACGAAGATCTGCATA 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424525019261376