Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq71326 111 5e-19 seq76579 100 9e-16 seq4177 84.2 7e-11 >seq71326 Length=3810 Score = 111 bits (122), Expect = 5e-19 Identities = 129/173 (75%), Gaps = 1/173 (1%) Strand=Plus/Plus Query 443699 CTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTT 443758 |||| |||||| || ||| || || | |||||| || | || || |||| ||| Sbjct 2135 CTTCCCCGAGCGTCTCATCGGCTTCGCCGCGGTCGAGGGCATCTTCTTCTCCGGCT-CTT 2193 Query 443759 TAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACG 443818 | ||||||||||||| | || ||||| || || |||| |||||| |||| || |||| Sbjct 2194 TCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCCGGTCTTGCCTTCAGCAACG 2253 Query 443819 AACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTAC 443871 | || ||||| || ||||||||| |||| |||||||| || || || |||||| Sbjct 2254 AGCTTATCAGCCGCGACGAGGGTCTGCACTGCGACTTTGCTTGCCTCCTCTAC 2306 >seq76579 Length=2215 Score = 100 bits (110), Expect = 9e-16 Identities = 86/105 (82%), Gaps = 1/105 (1%) Strand=Plus/Plus Query 256535 CACTTTTACGGGTGGCGAAACGGCCTGAAGACGGGCATGTACTACCTGCGCACCCGACCA 256594 ||||| |||| ||||| || ||||| ||||||||||||||||||||||||||||| || Sbjct 169 CACTTCTACGCCTGGCGCAAGGGCCTCAAGACGGGCATGTACTACCTGCGCACCCGGCCG 228 Query 256595 GCGGCCGACCCGATCCAATTCACCGTAGCGCCAGA-GTGCTCGTC 256638 || ||| || ||||||| ||||| || | || || |||| |||| Sbjct 229 GCCGCCAACGCGATCCAGTTCACGGTCGAGCAGGAGGTGCCCGTC 273 >seq4177 Length=147 Score = 84.2 bits (92), Expect = 7e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 254981 CCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAACGC 255040 || ||| | || || | |||| || || ||||||||||| || || |||||||| ||| Sbjct 4 CCGATGCTGCGCGTCTACAACGACACTGCCCGCTACGTCGACCAGGGCGGCGGCAAGCGC 63 Query 255041 CCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACAT 255084 || || || |||||||||| |||||||||||||||||||| Sbjct 64 AAGGGCGCCTTTGCCATCTACCTCGAGCCGTGGCACGCCGACAT 107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1586727329328360