Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq79005 212 8e-50 seq68661 96.9 4e-15 seq77627 93.3 5e-14 seq71326 86.0 8e-12 >seq79005 Length=17376 Score = 212 bits (234), Expect = 8e-50 Identities = 577/873 (66%), Gaps = 23/873 (3%) Strand=Plus/Plus Query 111225 ACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACT 111284 |||| || |||||||| || |||| ||||| || ||| || || ||||||| Sbjct 683 ACTTGGGCAGGGCGATCGAGGCCAGGTTGCACACGGCCACTTCGTCGGGCGAGGTGTACT 742 Query 111285 CTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCT 111344 | | || || || | ||| || || ||||| |||| | || ||||| || Sbjct 743 GGATGACCTCCGTGCACAGGTTCGACGACTGGATCGTGCCCAGGTGCTGCTGGTTCGACT 802 Query 111345 TCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGA 111404 | ||||||| || ||||||||||||||||||||||| || ||||| |||| || | || Sbjct 803 TGCTGTTGCAGGCGTCCTTGTAGAGCATGTAGGGCGTGCCAGTCTCGATCTGCGACTCGA 862 Query 111405 GAATAGCCTTCCAAACATCGGCGGCTGGTACAAT--GGCGTTGGCCCGTCCCTCCGCCTC 111462 | || || ||| | || ||| || | |||| ||| || |||||| ||| Sbjct 863 GGATCGCAAACCAGAGCTCCTGGGCCTTGACCACCCGGCG--GGCGCGGCCCTCCAGCTC 920 Query 111463 GTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTT 111522 ||| || |||||||||||| ||| || ||| | || || || |||| Sbjct 921 GTAGCGCTCATACTTCTCTTCAAACTCCTTGCCCCACGAGTCAAACAGGCCGGGCGCCTC 980 Query 111523 GTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGG 111582 || || ||||| || ||||| | || || ||| || ||||||||||| ||||| || Sbjct 981 GTTGGGGCAGAAGAGCGACCAGTCGCCGCCAGACTCGACGCGCTTCATGAAGAGGTCGGG 1040 Query 111583 AATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCG 111642 ||||||||| | ||||| || | | || ||| || | || ||||| || Sbjct 1041 GATCCACAGGCCGTAGAAGAGGTCGCGAGCGCGGTTCTCCTCCTTGCCGTGGTTCT-TCT 1099 Query 111643 TAA-CTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATC 111701 | | ||| | || || | ||| || |||||||| ||||| ||||||| || | | | Sbjct 1100 TGAGCTCCAAAAAGTCAAAGATGTCGGCGTGCCACGGCTCGAGATAGATGGCAAAGGCGC 1159 Query 111702 CCTTTCGAC-GCC--CAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCA 111758 |||| || ||| | | || | || ||||| || ||| |||| | ||||| |||| Sbjct 1160 CCTTGCGCTTGCCGCCGCCCTGGTCGACGTAGCGGGCGGTGTCGTTGTAGACGCGCAGCA 1219 Query 111759 TTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAAT--ACGAGATTTATTGGCTCT 111816 | || | | ||| | || || || || || ||||| ||||| | | ||| | Sbjct 1220 TCGGGACGAGACCGTTCGAGGTGCCGTTGGTGCCGCGAATGTACGAGTTGGA--GGCGCG 1277 Query 111817 CACATCATG-GATGTGCATC----CCAATACCCCCAGCCCACTTTGAGATTTGCGCACAC 111871 | || | || ||| | || ||||| ||||| |||| ||||| | || ||| Sbjct 1278 GA-----TGCGGTGGGCAGCGACGCCGATACCGCCAGCTGACTTGGAGATGAGGGCGCAC 1332 Query 111872 TCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAA 111931 | | | || || | |||||||| | ||| ||||||||||| ||| || |||||||| Sbjct 1333 TGCTTGAGCGTGTCGTAGATACCCTCGATCGAGTCCTCCTTCATGGTGAGGAGGAAGCAC 1392 Query 111932 CTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAAC 111991 || | |||||| | || || || || ||||||||||| ||||| ||||| |||| Sbjct 1393 GACGAAAGCTGCGGGCGGGGGGTGCCGGCGTTGAAGAGGGTCGGTGTGGCGTGGGTGAAG 1452 Query 111992 ATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATG 112051 | ||| || | | |||||| ||||| | ||| | |||| ||| ||| | Sbjct 1453 AGCTGTTGCGAGAGCAAGTCGTAGGTCTCGATGACGGCGGGGATGTTGTCCATGTGAAGA 1512 Query 112052 CCGATTGCGACCCGCATGAACATGTACTGTGGG 112084 |||| || || ||||||| ||||| ||| ||| Sbjct 1513 CCGACGGCAACACGCATGAGCATGTGCTGGGGG 1545 >seq68661 Length=10605 Score = 96.9 bits (106), Expect = 4e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 ||||||||| ||| || ||||| || ||| || || || || |||||| || || Sbjct 2250 GGCAAACTCGGCGTGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGCGAGGCC 2309 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 ||||||||||| || ||||| | ||| | || | ||||| || || ||||||||||| Sbjct 2310 GGGCATGAGACCGCGTTTCTTGAGCCAGAAGATGGAACAGAAGGAGCCCGAGAAGAAGAT 2369 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGG 122818 ||||| || |||||| ||| ||||| ||||| |||| Sbjct 2370 GCCCTCGACTGCGGCAAACCCAACGAGGCGCTCGGCAAAGG 2410 >seq77627 Length=171561 Score = 93.3 bits (102), Expect = 5e-14 Identities = 194/289 (67%), Gaps = 0/289 (0%) Strand=Plus/Plus Query 111717 CTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTG 111776 |||||| || ||||| || ||| |||| | ||||| ||||| || || | |||| | Sbjct 145207 CTTGATCGACGTAGCGGGCAGTGTCGTTGTAGACGCGCAGCATGGGGATGAGGCCATTGG 145266 Query 111777 ATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCC 111836 | || || || || ||||| || || || | | | || | | || | Sbjct 145267 AGGTCCCGTTGGTGCCGCGAATGTAGGAGTTGGCCGCGCGGATCTTGTGCACGGCCACGC 145326 Query 111837 CAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGT 111896 | || || || || | ||| ||||| |||| ||| | || || | ||||| |||| Sbjct 145327 CGATGCCTCCCGCGCTCTTGGAGATGAGCGCGCACCGTTTGAGGGTCTCGTAGATGCCGT 145386 Query 111897 TGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTAC 111956 ||| ||||||||||| | | | || ||||||||| ||||||||| | || || | Sbjct 145387 CGATGGAGTCCTCCTTCATATCCAAGAGAAAGCAACTGCTCATCTGCGGGATGGGCGTGC 145446 Query 111957 CAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACAT 112005 |||| ||||||||||| || || ||||| |||||| | || ||||| Sbjct 145447 CAGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAACAGAAACTGAGACAT 145495 Score = 84.2 bits (92), Expect = 3e-11 Identities = 158/230 (69%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 122671 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCC 122730 || || ||||| || ||| || || || || |||||| || || ||||||||||| Sbjct 137037 TGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGCGAGGCCGGGCATGAGACCG 136978 Query 122731 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 122790 || ||||| | ||| | || | ||||| || || ||||||||||||||||| || Sbjct 136977 CGTTTCTTGAGCCAGAAGATGGAACAGAAGGAGCCCGAGAAGAAGATACCCTCGACGGCG 136918 Query 122791 GCAAACGCAAAAAGGCGTTCGGCGAAGGAG-CGAGACTTTGC--ATCAAACCATTTCATT 122847 || || | | || || ||||| |||| | |||||| | | | | ||| |||| Sbjct 136917 GCGAATCCGACGAGACGCTCGGCAAAGGTGTCGAGACCCTCCTTGTTGATCCACCGCATT 136858 Query 122848 GCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAA 122897 ||||| | |||||||||| | | || || || | |||||| | ||| Sbjct 136857 GCCCACTCGGCCTTCTTCTTGACCGAGGGCACCGTCTTGATGGCGTTAAA 136808 >seq71326 Length=3810 Score = 86.0 bits (94), Expect = 8e-12 Identities = 148/211 (70%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| |||||||| || ||| ||||| || || |||| ||||| Sbjct 2293 GCAAAGTCGCAGTGCAGACCCTCGTCGCGGCTGATAAGCTCGTTGCTGAAGGCAAGACCG 2234 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| || || |||||||| | ||| | || | |||||| || |||||||||||||| Sbjct 2233 GGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAAGAGCCGGAGAAGAAGATG 2174 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGG-AGCGAGACTTTGCAT-CAA 122836 ||||| || || || | | || || |||| ||||| ||| || | | | ||| Sbjct 2173 CCCTCGACCGCGGCGAAGCCGATGAGACGCTCGGGGAAGGTCTCGACACCCTCCTTGCAA 2114 Query 122837 A-CCATTTCATTGCCCATTTCGCCTTCTTCT 122866 | ||| ||| ||||| | |||||||||| Sbjct 2113 ATCCAGCGCATGGCCCACTCGGCCTTCTTCT 2083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627411441580800