Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq79005 297 2e-75 seq77627 131 2e-25 seq68661 123 3e-23 seq71326 96.9 4e-15 seq73752 82.4 9e-11 seq69052 82.4 9e-11 seq66904 82.4 9e-11 >seq79005 Length=17376 Score = 297 bits (328), Expect = 2e-75 Identities = 948/1446 (66%), Gaps = 47/1446 (3%) Strand=Plus/Plus Query 118134 AGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTC 118193 || |||| ||||| || || || || || ||| |||| | | ||||| |||||| Sbjct 124 AGGTGCTCGTTGACGACGGTGAAGTCGCCGGCAAGGATGCGGCGCGTGTAGATGTTGGTC 183 Query 118194 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATG 118253 ||||| |||||||||||||| ||||| || | ||| || | || ||||| || |||||| Sbjct 184 GTGTAGGGCTCAAAGCACTCGTTGTTGCCGAGGATCTGCGAGGTCGAGGCAGTCGGCATG 243 Query 118254 GGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCC 118313 || || | ||| || ||| ||||| || | |||| | |||| | | Sbjct 244 GGCGCGACGAGCAGCGAGTTGCGGAGGCCGTGGCGGGCAATGTTGGCGCGCAGAGTGGTC 303 Query 118314 CAGTCGTA--GTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGG 118371 ||||| | | | | | | | || ||| | || ||| || | || | | Sbjct 304 CAGTCCCAACGGTCCGACGGGACGACGCC--CCAGAGGTCGGGCTGCAGCTTGCCCTTCG 361 Query 118372 ACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCG---GAGC 118428 | || ||||| || | ||||| || | |||||| |||| |||| ||| ||| Sbjct 362 AGGCCGGCGAGCCGGGGTAGGTCTCGTAGGTGCCCTCGACCTGGGCCAGCTCGTTCGAG- 420 Query 118429 TCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCA-TTCATTGCCTTGGCC 118487 ||| || || || | || || || ||||| ||| | || || | | |||| Sbjct 421 --GCCACGCAAGCGGCATAGTAGATGGTCTCAAAGATG-GCGCGGTTGAGCTCGCGGGCC 477 Query 118488 TCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCG 118547 |||||| || ||| | | || | || || || || || || || || || || Sbjct 478 TCGTCGCTCTCCCACGGGTGACGCAGGATCATGAAGACGTCGGCCAGGCCCTGCACGCCA 537 Query 118548 AGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTC---CACGGGATAAAAA 118604 | ||| || ||||| || | | || || | || || ||| ||| || || | Sbjct 538 ATGCCGATGGGGCGGTGGCGCTGGTTCGAGGTGCGGGC---CTCGGGCACCGGGTAGTAG 594 Query 118605 TTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTT 118664 || | ||||| ||| | || || || |||||||| ||||| | ||| ||||| Sbjct 595 TTGATGTCGATCACCTTGTTGAGGTTCTTGGTGACGACCTTGACCACGTCAAACAGCTTC 654 Query 118665 TCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGA 118724 | || |||||| ||| ||| | ||| |||| || |||||||| || ||||| Sbjct 655 TGGTGATCAAA-CTGGCCGTCGA--CGATGA---ACTTGGGCAGGGCGATCGAGGCCAGG 708 Query 118725 TTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAA 118784 || ||||| | || || ||||||| || | |||||||||| ||| || Sbjct 709 TTGCACACGGCCACTTCGTCGGGCGAGGTGTACTGGATGACCTCCGTGCACAGGTTCGAC 768 Query 118785 CTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGC 118844 || || ||||||| || || || || ||||| |||| || || |||||||| ||| Sbjct 769 GACTGGATCGTGCCCAGGTGCTGCTGGTTCGACTTGCTGTTGCAGGCGTCCTTGTAGAGC 828 Query 118845 ATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATC---GGCA 118901 ||||| ||||| || ||||| | || |||| ||| || || ||||| || ||| Sbjct 829 ATGTAGGGCGTGCCAGTCTCGATCTGCGACTCGAGGATCGCAAACCAGAGCTCCTGGGC- 887 Query 118902 GCTGGCACAGT-GGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAA 118960 || | || |||| ||| || ||||| |||||| || ||||||| Sbjct 888 -CTTGACCACCCGGCG--GGCGCGGCCCTCCAGCTCGTAGCGCTCATACTTCTCTTCAAA 944 Query 118961 CTC-TTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATT 119019 ||| || |||||| || | || || || |||| | ||||||||||| ||||| | Sbjct 945 CTCCTTGCCCCACGAG-TCAAACAGGCCGGGCGCCTCGTTGGGGCAGAAGAGCGACCAGT 1003 Query 119020 GACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCG-AGAAGAGA 119078 || || ||| || ||||||||||||||||| |||||||| || |||| ||||||| Sbjct 1004 CGCCGCCAGACTCGACGCGCTTCATGAAGAGGTCGGGGATCCACAG-GCCGTAGAAGAGG 1062 Query 119079 TCCCGACAGCGAGCTTCT--TCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGA 119136 || ||| ||| | |||| || | || || || | |||||||||||| | || Sbjct 1063 TCGCGA--GCGCGGTTCTCCTCCTTGCCGTGGTTCTTCTTGAGCTCCAAAAAGTCAAAGA 1120 Query 119137 TATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGA---CGACCAGCCT 119193 | || ||||||||||| || || || | || | | ||||| || | || ||| Sbjct 1121 TGTCGGCGTGCCACGGCTCGAGATAGATGGCAAAGGCGCCCTTGCGCTTGCCGCCGCCCT 1180 Query 119194 GGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATT 119253 ||| || || | || ||| |||| | || || ||||| || | || ||| | || Sbjct 1181 GGTCGACGTAGCGGGCGGTGTCGTTGTAGACGCGCAGCATCGGGACGAGACCGTTCGAGG 1240 Query 119254 GGCCATTTGTCCCCCGAAT--ACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACC 119311 ||| || || || ||||| ||||| || ||| | || |||| | || Sbjct 1241 TGCCGTTGGTGCCGCGAATGTACGAG--TTGGAGGCGCGGATGCGGTGGGCAGCGACGCC 1298 Query 119312 AATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATC 119371 ||||| || || |||| ||||| | ||||||| | |||| || ||||||| || || Sbjct 1299 GATACCGCCAGCTGACTTGGAGATGAGGGCGCACTGCTTGAGCGTGTCGTAGATACCCTC 1358 Query 119372 GATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACC 119431 ||||||||| |||| | | || ||||||||| ||| | || || | ||| || || Sbjct 1359 GATCGAGTCCTCCTTCATGGTGAGGAGGAAGCACGACGAAAGCTGCGGGCGGGGGGTGCC 1418 Query 119432 AGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTGTCGTAGGT 119491 ||||||||||| || ||||| |||||| |||| | ||| || | | ||||||||| Sbjct 1419 GGCGTTGAAGAGGGTCGGTGTGGCGTGGGTGAAGAGCTGTTGCGAGAGCAAGTCGTAGGT 1478 Query 119492 CTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTA 119551 ||| | ||||||||| |||| ||| ||||| ||||| | || ||||| | ||||| Sbjct 1479 CTCGATGACGGCGGGGATGTTGTCCATGTGAAGACCGACGGCAACACGCATGAGCATGTG 1538 Query 119552 TTGGGG 119557 ||||| Sbjct 1539 CTGGGG 1544 >seq77627 Length=171561 Score = 131 bits (144), Expect = 2e-25 Identities = 170/233 (73%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 130028 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 130087 || || |||||||| ||| |||||| || || |||||| || || ||||||||||| Sbjct 137037 TGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGCGAGGCCGGGCATGAGACCG 136978 Query 130088 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 130147 || ||||| | |||||| || | ||| || ||||| ||||||||||| ||||| || Sbjct 136977 CGTTTCTTGAGCCAGAAGATGGAACAGAAGGAGCCCGAGAAGAAGATACCCTCGACGGCG 136918 Query 130148 GCGAACGCAAAGAGACGCTCAGCAAAGGAG-CGGGA--CTTTGTATCAAACCACTTCATC 130204 ||||| | | ||||||||| ||||||| | || || || | | | |||| ||| Sbjct 136917 GCGAATCCGACGAGACGCTCGGCAAAGGTGTCGAGACCCTCCTTGTTGATCCACCGCATT 136858 Query 130205 GCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAG 130257 ||||||| ||||| |||| || | || || |||| ||| || | |||||| Sbjct 136857 GCCCACTCGGCCTTCTTCTTGACCGAGGGCACCGTCTTGATGGCGTTAAAGAG 136805 Score = 91.5 bits (100), Expect = 2e-13 Identities = 190/283 (67%), Gaps = 0/283 (0%) Strand=Plus/Plus Query 119208 GCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCC 119267 |||||| |||| | || || ||||| || |||| |||| ||| || || || || Sbjct 145224 GCAGTGTCGTTGTAGACGCGCAGCATGGGGATGAGGCCATTGGAGGTCCCGTTGGTGCCG 145283 Query 119268 CGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCAC 119327 ||||| || || || | || | ||| | | || || || || || || | | Sbjct 145284 CGAATGTAGGAGTTGGCCGCGCGGATCTTGTGCACGGCCACGCCGATGCCTCCCGCGCTC 145343 Query 119328 TTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTA 119387 || ||||| |||||||| |||| | ||||||| || ||||| ||||| |||| Sbjct 145344 TTGGAGATGAGCGCGCACCGTTTGAGGGTCTCGTAGATGCCGTCGATGGAGTCCTCCTTC 145403 Query 119388 TTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTT 119447 | | | ||| ||||| || ||| || || |||| || |||||||||||||| || Sbjct 145404 ATATCCAAGAGAAAGCAACTGCTCATCTGCGGGATGGGCGTGCCAGCGTTGAAGAGGGTC 145463 Query 119448 GGTGTCGCGTGGATGAACATACCTTGGGACATCTTGTCGTAGG 119490 || || ||||| |||||| | || ||||| ||||||| Sbjct 145464 GGGGTGGCGTGCGTGAACAGAAACTGAGACATGAGCTCGTAGG 145506 >seq68661 Length=10605 Score = 123 bits (136), Expect = 3e-23 Identities = 124/161 (77%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 ||||||||| ||| || |||||||| ||| |||||| || || |||||| || || Sbjct 2250 GGCAAACTCGGCGTGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGCGAGGCC 2309 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 ||||||||||| || ||||| | |||||| || | ||| || ||||| ||||||||||| Sbjct 2310 GGGCATGAGACCGCGTTTCTTGAGCCAGAAGATGGAACAGAAGGAGCCCGAGAAGAAGAT 2369 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGG 130175 ||||| || || ||| ||| ||| ||||| ||||||| Sbjct 2370 GCCCTCGACTGCGGCAAACCCAACGAGGCGCTCGGCAAAGG 2410 >seq71326 Length=3810 Score = 96.9 bits (106), Expect = 4e-15 Identities = 198/288 (69%), Gaps = 5/288 (2%) Strand=Plus/Minus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||| ||||||||||| ||| ||| || || || |||| ||||| Sbjct 2293 GCAAAGTCGCAGTGCAGACCCTCGTCGCGGCTGATAAGCTCGTTGCTGAAGGCAAGACCG 2234 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||||| || || |||||||| | |||||| || | || || ||||| ||||||||||| Sbjct 2233 GGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAAGAGCCGGAGAAGAAGATG 2174 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGG-AGCGGGA-CTTTGTATCAA 130193 ||||| || ||||| | | ||||||||| | |||| || | | | | ||| Sbjct 2173 CCCTCGACCGCGGCGAAGCCGATGAGACGCTCGGGGAAGGTCTCGACACCCTCCTTGCAA 2114 Query 130194 A-CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCA 130252 | ||| ||| ||||||| ||||| |||| | | || || |||| || || Sbjct 2113 ATCCAGCGCATGGCCCACTCGGCCTTCTTCTTCACCGAGGGCACAGTCTCCATGGCCCGG 2054 Query 130253 AAGAGTTCCTTCTTTTCTGAT-GGATCTTTGATGTACTTATCTATGAG 130299 ||||| | | ||| || ||| |||||||| | ||| | || ||||| Sbjct 2053 AAGAGGTGGTCCTTCTC-GATCGGATCTTTAACGTAGGTGTCGATGAG 2007 >seq73752 Length=9716 Score = 82.4 bits (90), Expect = 9e-11 Identities = 161/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 14236 ACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTC 14295 |||||||||||| || || |||||||||| ||| || || || | ||||| | | Sbjct 5959 ACCGACGGCGTCGATCTCGTCGATGAAAATGATGCACGGAGCGTTCTTGCGGGCCTCCGC 5900 Query 14296 AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGC 14355 ||||| || ||||| | | | ||||| || || ||||| || | ||| | | | Sbjct 5899 AAAGAGGTCACGCACGCGCGACGGCCCGACGCCGACGAACATTTCGATAAAGTCCGACCC 5840 Query 14356 GGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCT 14414 || | || | || |||||| ||| | || ||||| |||| || || |||||||||| Sbjct 5839 GG-AGATCGAGAAGAAGGGCACGCCGGCCTCGCCCGCTGTGGCCCGCGCCAGGAGGGTCT 5781 Query 14415 TCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGG-ATCCTGGCACC 14466 | ||||| || || ||| |||| || || || | |||| ||| |||| || Sbjct 5780 TGCCCGTGCCGGGCGGCCCGACGAGCAGCGCGCC-CTTGGGAATCTTGGCGCC 5729 >seq69052 Length=9458 Score = 82.4 bits (90), Expect = 9e-11 Identities = 161/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 14236 ACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTC 14295 |||||||||||| || || |||||||||| ||| || || || | ||||| | | Sbjct 6062 ACCGACGGCGTCGATCTCGTCGATGAAAATGATGCACGGAGCGTTCTTGCGGGCCTCCGC 6003 Query 14296 AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGC 14355 ||||| || ||||| | | | ||||| || || ||||| || | ||| | | | Sbjct 6002 AAAGAGGTCACGCACGCGCGACGGCCCGACGCCGACGAACATTTCGATAAAGTCCGACCC 5943 Query 14356 GGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCT 14414 || | || | || |||||| ||| | || ||||| |||| || || |||||||||| Sbjct 5942 GG-AGATCGAGAAGAAGGGCACGCCGGCCTCGCCCGCTGTGGCCCGCGCCAGGAGGGTCT 5884 Query 14415 TCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGG-ATCCTGGCACC 14466 | ||||| || || ||| |||| || || || | |||| ||| |||| || Sbjct 5883 TGCCCGTGCCGGGCGGCCCGACGAGCAGCGCGCC-CTTGGGAATCTTGGCGCC 5832 >seq66904 Length=9981 Score = 82.4 bits (90), Expect = 9e-11 Identities = 161/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 14236 ACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTC 14295 |||||||||||| || || |||||||||| ||| || || || | ||||| | | Sbjct 4023 ACCGACGGCGTCGATCTCGTCGATGAAAATGATGCACGGAGCGTTCTTGCGGGCCTCCGC 4082 Query 14296 AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGC 14355 ||||| || ||||| | | | ||||| || || ||||| || | ||| | | | Sbjct 4083 AAAGAGGTCACGCACGCGCGACGGCCCGACGCCGACGAACATTTCGATAAAGTCCGACCC 4142 Query 14356 GGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCT 14414 || | || | || |||||| ||| | || ||||| |||| || || |||||||||| Sbjct 4143 GG-AGATCGAGAAGAAGGGCACGCCGGCCTCGCCCGCTGTGGCCCGCGCCAGGAGGGTCT 4201 Query 14415 TCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGG-ATCCTGGCACC 14466 | ||||| || || ||| |||| || || || | |||| ||| |||| || Sbjct 4202 TGCCCGTGCCGGGCGGCCCGACGAGCAGCGCGCC-CTTGGGAATCTTGGCGCC 4253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617824124178880