Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq79005 174 2e-38 seq77627 132 6e-26 seq68661 132 6e-26 seq71326 104 3e-17 >seq79005 Length=17376 Score = 174 bits (192), Expect = 2e-38 Identities = 498/753 (66%), Gaps = 31/753 (4%) Strand=Plus/Minus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| ||| ||||| ||||||| || ||| ||||| |||| ||| |||| | || Sbjct 1545 CCCCCAGCACATGCTCATGCGTGTTGCCGTCGGTCTTCACATGGACAACATCCCCGCCGT 1486 Query 104281 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | | ||||| |||||| | | || ||| | |||| ||||| ||||| |||||||| Sbjct 1485 CATCGAGACCTACGACTTGCTCTCGCAACAGCTCTTCACCCACGCCACACCGACCCTCTT 1426 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||| || || || || | || || | || |||||||| || ||| |||||||| Sbjct 1425 CAACGCCGGCACCCCCCGCCCGCAGCTTTCGTCGTGCTTCCTCCTCACCATGAAGGAGGA 1366 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 ||| ||| | |||||||| | || || | | |||| || | ||||| |||| ||||| Sbjct 1365 CTCGATCGAGGGTATCTACGACACGCTCAAGCAGTGCGCCCTCATCTCCAAGTCAGCTGG 1306 Query 104461 GGGTATTGG----GATGCACATC-CATGATGTGAGAGCCAATAAATCTCGT--ATTCGGG 104513 ||||| || | ||| || | || | | ||| | | ||||| ||||| | Sbjct 1305 CGGTATCGGCGTCGCTGCCCACCGCA-----TCCGCGCC--TCCAACTCGTACATTCGCG 1253 Query 104514 GGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 104573 | || || || || | ||| | | || ||||| ||||| | |||| ||| || | Sbjct 1252 GCACCAACGGCACCTCGAACGGTCTCGTCCCGATGCTGCGCGTCTACAACGACACCGCCC 1193 Query 104574 GCTATGTAAATCAAGCTG--GGC-GTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCAT 104630 |||| || | || | | ||| || ||||| | | || ||||||| ||||| | Sbjct 1192 GCTACGTCGACCAGGGCGGCGGCAAGCGCAAGGGCGCCTTTGCCATCTATCTCGAGCCGT 1133 Query 104631 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAG--GC 104688 ||||||| || ||| | || || | ||| | ||||| || | |||||| | Sbjct 1132 GGCACGCCGACATCTTTGACTTTTTGGAGCTCAAGAAGAACCACGGCAAGGAGGAGAACC 1073 Query 104689 GCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGA 104748 ||| | ||||| ||||||| || || ||||| || || |||||||||||| | || || Sbjct 1072 GCGCT--CGCGACCTCTTCTACGGCCTGTGGATCCCCGACCTCTTCATGAAGCGCGTCGA 1015 Query 104749 GGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGT 104808 | | ||| | ||||| ||||| || || || |||| || || || | || | Sbjct 1014 GTCTGGCGGCGACTGGTCGCTCTTCTGCCCCAACGAGGCGCCCGGCCTGTTTGACTCGTG 955 Query 104809 GGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC--G 104866 ||| |||||||||||| || |||||| || || | ||| | || | Sbjct 954 GGGCAAGGAGTTTGAAGAGAAGTATGAGCGCTACGAGCTGGAGGGCC--GCGCCCGCCGG 897 Query 104867 ACGGTGCCAGCTGCC---GATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGT 104923 ||| | || ||| || | ||| || || ||| |||| || | ||||||||| Sbjct 896 GTGGT-CAAG--GCCCAGGAGCTCTGGTTTGCGATCCTCGAGTCGCAGATCGAGACTGGC 840 Query 104924 ACACCATACATGCTTTACAAAGACGCCTGTAAC 104956 || || |||||||| ||||| |||||||| ||| Sbjct 839 ACGCCCTACATGCTCTACAAGGACGCCTGCAAC 807 >seq77627 Length=171561 Score = 132 bits (146), Expect = 6e-26 Identities = 179/246 (73%), Gaps = 5/246 (2%) Strand=Plus/Plus Query 94703 AGAAGAAGC--AGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGA 94760 |||| |||| | |||||| | |||||| | || || || | | | ||||| || || Sbjct 136792 AGAAAAAGCCCATCTCTTTAACGCCATCAAGACGGTGCCCTCGGTCAAGAAGAAGGCCGA 136851 Query 94761 TTGGGCTATGAAGTGGTTTGATACAAAG--TCGCGTT-CCTTTGCTGAGCGACTCTTCGC 94817 ||||| ||| |||| | | | || || || ||||||| ||||| ||| ||| Sbjct 136852 GTGGGCAATGCGGTGGATCAACAAGGAGGGTCTCGACACCTTTGCCGAGCGTCTCGTCGG 136911 Query 94818 ATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAA 94877 ||| || || ||||||||||||||||| || |||||||| | || | |||||||| Sbjct 136912 ATTCGCCGCCGTCGAGGGTATCTTCTTCTCGGGCTCCTTCTGTTCCATCTTCTGGCTCAA 136971 Query 94878 GAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 ||| || ||||||||||| || ||| ||||||||||||||| ||| || |||||||| Sbjct 136972 GAAACGCGGTCTCATGCCCGGCCTCGCCTTCTCCAACGAGCTCATCAGCCGCGACGAGGG 137031 Query 94938 ACTCCA 94943 || || Sbjct 137032 CCTGCA 137037 Score = 84.2 bits (92), Expect = 3e-11 Identities = 192/289 (66%), Gaps = 0/289 (0%) Strand=Plus/Minus Query 104300 ATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGA 104359 ||||| || | |||||| ||||| || || ||||||||||| ||||| || || | Sbjct 145495 ATGTCTCAGTTTCTGTTCACGCACGCCACCCCGACCCTCTTCAACGCTGGCACGCCCATC 145436 Query 104360 CCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTAT 104419 || || ||| ||||||||| || | | | ||||||||||| ||| |||| ||||| Sbjct 145435 CCGCAGATGAGCAGTTGCTTTCTCTTGGATATGAAGGAGGACTCCATCGACGGCATCTAC 145376 Query 104420 GGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATC 104479 | || || | ||| |||| ||||| ||| | || || || || || || | | Sbjct 145375 GAGACCCTCAAACGGTGCGCGCTCATCTCCAAGAGCGCGGGAGGCATCGGCGTGGCCGTG 145316 Query 104480 CATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATT 104539 || | | | || || || ||||| || || || || || |||| | Sbjct 145315 CACAAGATCCGCGCGGCCAACTCCTACATTCGCGGCACCAACGGGACCTCCAATGGCCTC 145256 Query 104540 ATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAG 104588 || || ||||| ||||| | |||| ||| || ||||| || |||||| Sbjct 145255 ATCCCCATGCTGCGCGTCTACAACGACACTGCCCGCTACGTCGATCAAG 145207 >seq68661 Length=10605 Score = 132 bits (146), Expect = 6e-26 Identities = 185/258 (72%), Gaps = 5/258 (2%) Strand=Plus/Minus Query 94702 GAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGAT 94761 |||||| || ||||| | |||||| |||| || || | | | ||||| || || Sbjct 2507 GAGAAGGCCCATCTCTTCAATGCCATCGAAACGGTGCCCTCGGTGAAGAAGAAGGCCGAG 2448 Query 94762 TGGGCTATGAAGTGGTTTGATACAAAGTCGCGTT----CCTTTGCTGAGCGACTCTTCGC 94817 ||||| ||| ||| | | | || ||||| ||||||| ||||| ||| | | Sbjct 2447 TGGGCGATGCGATGGATCAACAAGGAGG-GCGTTGACACCTTTGCCGAGCGCCTCGTTGG 2389 Query 94818 ATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAA 94877 ||||| || ||||| ||||||||||| || |||||||| | || | |||||||| Sbjct 2388 GTTTGCCGCAGTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGTTCCATCTTCTGGCTCAA 2329 Query 94878 GAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 ||| || ||||||||||| || ||| ||||||||||||||| ||| || |||||||| Sbjct 2328 GAAACGCGGTCTCATGCCCGGCCTCGCCTTCTCCAACGAGCTCATCAGCCGCGACGAGGG 2269 Query 94938 ACTCCACCAAGAGTTTGC 94955 || ||| |||||||| Sbjct 2268 CCTGCACGCCGAGTTTGC 2251 >seq71326 Length=3810 Score = 104 bits (114), Expect = 3e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 94796 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 94855 |||| | ||||| ||| ||| || || || ||||| ||||||||||| || || | Sbjct 2134 CCTTCCCCGAGCGTCTCATCGGCTTCGCCGCGGTCGAGGGCATCTTCTTCTCCGGCTCTT 2193 Query 94856 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 94915 ||||| | || | |||||||||||||| || || ||||| ||||| |||| ||||| Sbjct 2194 TCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCCGGTCTTGCCTTCAGCAACG 2253 Query 94916 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 |||||||| || |||||||| || ||| || ||||| Sbjct 2254 AGCTTATCAGCCGCGACGAGGGTCTGCACTGCGACTTTGC 2293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582684480003520