Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq66934 89.7 2e-12 seq70909 87.8 5e-12 seq74442 86.0 2e-11 seq74443 84.2 7e-11 seq73653 84.2 7e-11 seq73652 84.2 7e-11 seq73345 84.2 7e-11 seq70335 84.2 7e-11 seq64603 84.2 7e-11 >seq66934 Length=1683 Score = 89.7 bits (98), Expect = 2e-12 Identities = 163/236 (69%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 |||| | |||||||| | | || || || || ||||| ||||| || || || || | Sbjct 320 TTTAGAAGCCACCACGCAGACGAAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGT 261 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | | || || || || || || || || ||||||||||| || || ||||| | Sbjct 260 AGTCGGCCAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGT 201 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAAT-TTTAGCTTTTACATTATCAATCGAATCAGAT 140681 | || || || || || || ||||| || ||| || || || || || || | ||| Sbjct 200 CCGGGGGGATGCCCTCCTTGTCCTGGATCTTTTGC-TTCACGTTCTCGATGGTATCGCTC 142 Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || || |||| ||||| || || || || || || || |||||||| Sbjct 141 GACTCGACCTCGAGCGTAATAGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 86 >seq70909 Length=23563 Score = 87.8 bits (96), Expect = 5e-12 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 74473 AAAATATTGTATGGAGTGGGATTCGAACCCACGAGTCTTACGACAGTAGAACTTGAGTCT 74532 ||||||||| | ||||||| |||||||||||| || || | ||| ||||||||||||| Sbjct 6378 AAAATATTGGACAGAGTGGGGTTCGAACCCACGCGTGTTTCCACACCAGAACTTGAGTCT 6437 Query 74533 ACCCCCTTAGACC-ACTCGGGCATC 74556 |||||| |||| ||||||||||| Sbjct 6438 GGCCCCTTGGACCAACTCGGGCATC 6462 >seq74442 Length=6037 Score = 86.0 bits (94), Expect = 2e-11 Identities = 78/96 (81%), Gaps = 3/96 (3%) Strand=Plus/Minus Query 423765 AGCATGGATGCCCGAGT-GGTCTAAGGGGGCAGACTTAAGATCTGCTGGCG--AAAGCCT 423821 ||| |||||| |||||| ||||||||| ||||||||||||||||||||| | || Sbjct 952 AGCCTGGATGGCCGAGTTGGTCTAAGGCGGCAGACTTAAGATCTGCTGGTGGTTTCACCG 893 Query 423822 CGTGGGTTCAAACCCCACTCCGTGCATTTATTATAT 423857 ||||||||| ||||||||||| ||| || || ||| Sbjct 892 CGTGGGTTCGAACCCCACTCCAGGCAATTTTTCTAT 857 >seq74443 Length=6031 Score = 84.2 bits (92), Expect = 7e-11 Identities = 75/92 (82%), Gaps = 3/92 (3%) Strand=Plus/Minus Query 423765 AGCATGGATGCCCGAGT-GGTCTAAGGGGGCAGACTTAAGATCTGCTGGCG--AAAGCCT 423821 ||| |||||| |||||| ||||||||| ||||||||||||||||||||| | || Sbjct 946 AGCCTGGATGGCCGAGTTGGTCTAAGGCGGCAGACTTAAGATCTGCTGGTGGTTTCACCG 887 Query 423822 CGTGGGTTCAAACCCCACTCCGTGCATTTATT 423853 ||||||||| ||||||||||| ||| || || Sbjct 886 CGTGGGTTCGAACCCCACTCCAGGCAATTTTT 855 >seq73653 Length=3287 Score = 84.2 bits (92), Expect = 7e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 140529 ACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCA 140588 || || |||||||||||||| || || || || || || | |||||||||||| | ||| Sbjct 1259 ACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCTGCCAATGTTCGCCCAACCTCA 1318 Query 140589 AGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATC 140644 || || || || |||||||| || |||||||| || | || | ||| || |||| Sbjct 1319 AGCTGCTTCCCGGCAAAGATAAGGCGTTGCTGGTCTGCGGGCACTCCAACTATATC 1374 >seq73652 Length=3324 Score = 84.2 bits (92), Expect = 7e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 140529 ACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCA 140588 || || |||||||||||||| || || || || || || | |||||||||||| | ||| Sbjct 1259 ACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCTGCCAATGTTCGCCCAACCTCA 1318 Query 140589 AGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATC 140644 || || || || |||||||| || |||||||| || | || | ||| || |||| Sbjct 1319 AGCTGCTTCCCGGCAAAGATAAGGCGTTGCTGGTCTGCGGGCACTCCAACTATATC 1374 >seq73345 Length=6941 Score = 84.2 bits (92), Expect = 7e-11 Identities = 75/92 (82%), Gaps = 3/92 (3%) Strand=Plus/Plus Query 423765 AGCATGGATGCCCGAGT-GGTCTAAGGGGGCAGACTTAAGATCTGCTGGCG--AAAGCCT 423821 ||| |||||| |||||| ||||||||| ||||||||||||||||||||| | || Sbjct 6849 AGCCTGGATGGCCGAGTTGGTCTAAGGCGGCAGACTTAAGATCTGCTGGTGGTTTCACCG 6908 Query 423822 CGTGGGTTCAAACCCCACTCCGTGCATTTATT 423853 ||||||||| ||||||||||| ||| || || Sbjct 6909 CGTGGGTTCGAACCCCACTCCAGGCAATTTTT 6940 >seq70335 Length=6952 Score = 84.2 bits (92), Expect = 7e-11 Identities = 75/92 (82%), Gaps = 3/92 (3%) Strand=Plus/Minus Query 423765 AGCATGGATGCCCGAGT-GGTCTAAGGGGGCAGACTTAAGATCTGCTGGCG--AAAGCCT 423821 ||| |||||| |||||| ||||||||| ||||||||||||||||||||| | || Sbjct 93 AGCCTGGATGGCCGAGTTGGTCTAAGGCGGCAGACTTAAGATCTGCTGGTGGTTTCACCG 34 Query 423822 CGTGGGTTCAAACCCCACTCCGTGCATTTATT 423853 ||||||||| ||||||||||| ||| || || Sbjct 33 CGTGGGTTCGAACCCCACTCCAGGCAATTTTT 2 >seq64603 Length=1678 Score = 84.2 bits (92), Expect = 7e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 140529 ACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCA 140588 || || |||||||||||||| || || || || || || | |||||||||||| | ||| Sbjct 1435 ACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCTGCCAATGTTCGCCCAACCTCA 1494 Query 140589 AGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATC 140644 || || || || |||||||| || |||||||| || | || | ||| || |||| Sbjct 1495 AGCTGCTTCCCGGCAAAGATAAGGCGTTGCTGGTCTGCGGGCACTCCAACTATATC 1550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1513719746555544