Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq69527 89.7 3e-13 seq12680 89.7 3e-13 seq78127 86.0 4e-12 seq79045 84.2 1e-11 seq77962 84.2 1e-11 seq78417 82.4 5e-11 >seq69527 Length=538 Score = 89.7 bits (98), Expect = 3e-13 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | || || | |||||| ||||| ||| |||||| || ||||| || || | Sbjct 325 GCCGCCACGGAGGCGAAGCACCAAGTGGAGGGTGGACTCCTTCTGNATGTTGTAGTCAGC 266 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || |||| || || || || ||||| || || | ||||| ||||| || || Sbjct 265 GAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGG 206 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| ||||||||| || ||| | || || || | ||| | Sbjct 205 GATGCCCTCCTTGTCCTGGATCTTTTG-CTTCACGTTCTCGATGGTATCGCTGGACTCAA 147 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || | || || || || || || | ||| || || || ||||||||| Sbjct 146 CCTCGAGCGTAATAGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCATG 97 >seq12680 Length=217 Score = 89.7 bits (98), Expect = 3e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||| || | |||||| ||||| ||| |||||| || ||||| || || | Sbjct 62 CCGCCACGAAGGCGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 121 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || || || || || ||||| || | ||||| |||||||| || Sbjct 122 AGCGTGCGACCGTCCTCGAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCCGGGGGG 181 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTT 34628 | ||||||||||| |||||| || || Sbjct 182 ATACCCTCCTTGTCCTGGATCTTCTGCTT 210 >seq78127 Length=10502 Score = 86.0 bits (94), Expect = 4e-12 Identities = 140/198 (71%), Gaps = 3/198 (2%) Strand=Plus/Plus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 |||||| || ||||| || || | || || || |||| ||||| || || ||||| || Sbjct 3 CTCCTTCTGGATGTTGTAGTCAGCGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAA 62 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || | ||||| ||||| ||||| | ||||||||||| |||||| || || ||| Sbjct 63 GATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTCTG-CTTCACGT 121 Query 34635 T-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 | ||| ||||| | ||| || || | || || || || ||||| | || |||| Sbjct 122 TCTCAATGGTGTCCGAGGACTCGACCTCGAGCGTAATAGTCTTGCCGGTGAGGGTCTTCA 181 Query 34694 CAAAAATCTGCA-TGTTG 34710 | || ||||||| ||||| Sbjct 182 CGAAGATCTGCATTGTTG 199 >seq79045 Length=6779 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 ||||||| | ||||| | || | || ||||| |||||| || ||||| || || | Sbjct 3202 CGCCGCCGCGGAGACGAAGGACGAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGG 3261 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 || || || |||| || || || || || || || || | ||||| |||||||| | Sbjct 3262 CCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGGG 3321 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656 | | ||||||||||| |||||| || || ||| | || ||||| ||| Sbjct 3322 GGATGCCCTCCTTGTCCTGGATCTTCTG-CTTCACGTTCTCGATCGTGTCGGACGACTCT 3380 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | || ||||| ||||| || | |||||||| || |||||||| Sbjct 3381 ACCTCGAGCGTAATCGTCTTACCCGTAAGGGTTTTCACGAAGATCTGCAT 3430 >seq77962 Length=8127 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/205 (70%), Gaps = 3/205 (1%) Strand=Plus/Minus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 |||||| || ||||| || || | || || || |||| || || || || ||||| || Sbjct 6512 CTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAA 6453 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || | |||||| |||||||| || | |||||||||||| |||||| || || ||| Sbjct 6452 GATGAGACGCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTGGATCTTCTG-CTTGACGT 6394 Query 34635 T-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 | ||| ||||| ||| || || | ||| || || || || || | || || | Sbjct 6393 TCTCAATAGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTGA 6334 Query 34694 CAAAAATCTGCATGTTGATTGTATG 34718 | || || ||||||||| ||| ||| Sbjct 6333 CGAAGATTTGCATGTTG-TTGGATG 6310 >seq78417 Length=4549 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/209 (70%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 || ||||| |||||| || ||||| || || | || || || |||| ||||| || Sbjct 1071 TGAAGAGTTGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCGTCCTCAAGCTGC 1130 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || ||||| || || | ||||| ||||| ||||| | ||||||||||| ||||| Sbjct 1131 TTGCCGGCGAAGATAAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTC 1190 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 || || ||| | ||| ||||| | ||| || || | || || || || ||||| Sbjct 1191 TG-CTTCACGTTCTCAATSGTGTCCGAGGACTCGACCTCGAGCGTAATGGTCTTGCCGGT 1249 Query 34683 TAACGTTTTCACAAAAATCTGCA-TGTTG 34710 | || ||||| || ||||||| ||||| Sbjct 1250 GAGGGTCTTCACGAAGATCTGCATTGTTG 1278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314426390290184