Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq79045 118 9e-22 seq66207 118 9e-22 seq69527 111 1e-19 seq76450 107 2e-18 seq66934 105 6e-18 seq72946 102 7e-17 seq72945 102 7e-17 seq30245 89.7 4e-13 seq78836 86.0 5e-12 seq74944 86.0 5e-12 seq74943 86.0 5e-12 >seq79045 Length=6779 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||||||||||||| | ||||| || || || || | || Sbjct 3658 ATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACCATTACGCTCGAGGTCGAGTCCTCG 3599 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || || || || ||||| || || || || || || || Sbjct 3598 GACACCATTGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGTATTCCTCCGGACCAG 3539 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||| ||||| || | || ||| || ||| | |||| |||||| Sbjct 3538 CAGCGCCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGTACCCTGGCCGACTACAAC 3479 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||||||||| | || | || | ||| |||| || || || Sbjct 3478 ATCCAGAAGGAGTCGACTCTTCACCTCGTCCTCCGTCTGCGTGGCGGTAT 3429 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || || ||| | ||||| || || || || ||||| Sbjct 3430 ATGCAGATCTTCGTGAAAACCCTTACGGGTAAGACGATTACGCTCGAGGTAGAGTCGTCC 3371 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| |||| || || || || || || ||||| || ||||| || || || || Sbjct 3370 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 3311 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||| ||||| || | || ||| | ||| | |||| |||||| Sbjct 3310 CAGCGCCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAAC 3251 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || ||||||||||| Sbjct 3250 ATCCAGAAGGAGTCGAC 3234 >seq66207 Length=742 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| |||||| ||||||| || || || || | || Sbjct 44 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACTATTACGCTCGAGGTCGAGTCCTCG 103 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || || || || ||||| || ||||| || || || || Sbjct 104 GACACCATTGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 163 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || | || ||| | ||| | | || |||||| Sbjct 164 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCTGACTACAAC 223 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || ||||||||||| | || ||||| | || | || |||||| Sbjct 224 ATCCAGAAGGAGTCGACTCTCCACCTGGTTCTCCGCCTCCGTGGTGGC 271 >seq69527 Length=538 Score = 111 bits (122), Expect = 1e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| || || || || || || || ||| | ||||| || || || || | Sbjct 322 CGGCATGCAGATCTTCGTCAAGACCCTTACGGGTAAGACGATTACGCTCGAGGTCGAGTC 381 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 ||||||| |||| |||| || || || || || || ||||| || || || || || || Sbjct 382 GTCCGACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCTCCGGA 441 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 || ||||| | || | ||||||||| || | || ||| | ||| | |||| || Sbjct 442 CCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACCCTGGCCGACTA 501 Query 27164 CAACATTCAAAAGGAGTCGAC 27184 |||||| || ||||||||||| Sbjct 502 CAACATCCAGAAGGAGTCGAC 522 >seq76450 Length=2916 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || | || || || ||||||||||| || || || || ||| | ||| Sbjct 1099 ATGCAGATCTTCATCAAGACCCTCACCGGCAAGTCCATCACCCTGGAGGTGAGTTCCTCC 1040 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| || |||| ||||| || || | || ||||| ||||| || || ||||| || Sbjct 1039 GACTCCATCGAGACCGTCAAGCACAAGCTGCAGGACAAGGAAGGAATTCCTCCCGACCAG 980 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | ||| ||||| || | || || || || | |||| |||||| Sbjct 979 CAACGCTTGATCTTCGCTGGCAAGCAGCTCGAGGAGAGCCGCACGCTCGCCGAGTACAAC 920 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || || |||||||| ||| | || ||||| Sbjct 919 ATCCAGAAGGAGTCCACCCTCCACTTGGT 891 >seq66934 Length=1683 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| |||||| ||||||| || || || || || | Sbjct 86 ATGCAGATCTTCGTCAAGACGCTGACTGGCAAGACTATTACGCTCGAGGTCGAGTCGAGC 145 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| || || ||||| || || ||||| || ||||| || || || || Sbjct 146 GATACCATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 205 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | || ||||| || | || ||| | || | |||| |||||| Sbjct 206 CAGCGCCTCATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTGGCCGACTACAAC 265 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || ||||||||||| | || | || | ||| |||| |||||| Sbjct 266 ATCCAGAAGGAGTCGACTCTCCACCTCGTCCTTCGTCTGCGTGGTGGC 313 >seq72946 Length=5501 Score = 102 bits (112), Expect = 7e-17 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 26991 CAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGAC 27050 ||| | || || || || || ||||||||| | || || || || |||| || ||| Sbjct 909 CAGCTCTTCGTGAAGACCCTCACCGGCAAGACCATCACGCTCGAGATGGACCCCGGAGAC 968 Query 27051 TCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAG 27110 || || |||| |||| || | || ||||| |||||||| || ||||| ||| | Sbjct 969 TCCATCGAGACCATCAAGCAGCGCCTCCAGGACAAGGAAGGCATTCCGCCCGACCAAATG 1028 Query 27111 CGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATT 27170 ||||| || | |||||||| || |||| ||| | ||| | || ||||||||||| Sbjct 1029 CGTTTCATCTTTGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTCTCGGATTACAACATG 1088 Query 27171 CAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGG 27211 || |||||||| ||| | ||| | || | || ||||| || Sbjct 1089 CAGAAGGAGTCCACCCTCCATCTCGTCCTCCGCTTGCGTGG 1129 >seq72945 Length=5493 Score = 102 bits (112), Expect = 7e-17 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 26991 CAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGAC 27050 ||| | || || || || || ||||||||| | || || || || |||| || ||| Sbjct 909 CAGCTCTTCGTGAAGACCCTCACCGGCAAGACCATCACGCTCGAGATGGACCCCGGAGAC 968 Query 27051 TCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAG 27110 || || |||| |||| || | || ||||| |||||||| || ||||| ||| | Sbjct 969 TCCATCGAGACCATCAAGCAGCGCCTCCAGGACAAGGAAGGCATTCCGCCCGACCAAATG 1028 Query 27111 CGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATT 27170 ||||| || | |||||||| || |||| ||| | ||| | || ||||||||||| Sbjct 1029 CGTTTCATCTTTGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTCTCGGATTACAACATG 1088 Query 27171 CAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGG 27211 || |||||||| ||| | ||| | || | || ||||| || Sbjct 1089 CAGAAGGAGTCCACCCTCCATCTCGTCCTCCGCTTGCGTGG 1129 >seq30245 Length=127 Score = 89.7 bits (98), Expect = 4e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 26990 GCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGA 27049 |||||| || || || ||||||||||||||| | ||||| || || || || | || || Sbjct 127 GCAGATCTTCGTCAAGACTCTGACCGGCAAGACCATTACGCTCGAGGTCGAGTCCTCGGA 68 Query 27050 CTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACA 27109 | |||| |||| || || ||||| || || ||||| || ||||| || || || || || Sbjct 67 CACGATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCA 8 Query 27110 GCGT 27113 |||| Sbjct 7 GCGT 4 >seq78836 Length=3853 Score = 86.0 bits (94), Expect = 5e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 135622 AGATGGACGCGATTCAAATGGCTACGTAGGTTGTATGTGGTCTATTTGCGGTGTACACGA 135681 ||||||||| || | ||||||||||| || || |||| | || |||| || || || Sbjct 3333 AGATGGACGTGACCCCAATGGCTACGTCGGCTGCGCGTGGGCCATCGGCGGCGTGCATGA 3392 Query 135682 TCAAGGATGGAAGGAGCGCAAAGTGTTTGGCAAGATTCGCTATATGAACTATGACGGTTG 135741 || || ||||||||||| |||||||||||| | ||||| |||||||| | ||| || Sbjct 3393 CCAGGGCTGGAAGGAGCGGCCCGTGTTTGGCAAGGTGCGCTACATGAACTACGCCGGCTG 3452 >seq74944 Length=3286 Score = 86.0 bits (94), Expect = 5e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 135622 AGATGGACGCGATTCAAATGGCTACGTAGGTTGTATGTGGTCTATTTGCGGTGTACACGA 135681 ||||||||| || | ||||||||||| || || |||| | || |||| || || || Sbjct 1044 AGATGGACGTGACCCCAATGGCTACGTCGGCTGCGCGTGGGCCATCGGCGGCGTGCATGA 1103 Query 135682 TCAAGGATGGAAGGAGCGCAAAGTGTTTGGCAAGATTCGCTATATGAACTATGACGGTTG 135741 || || ||||||||||| |||||||||||| | ||||| |||||||| | ||| || Sbjct 1104 CCAGGGCTGGAAGGAGCGGCCCGTGTTTGGCAAGGTGCGCTACATGAACTACGCCGGCTG 1163 >seq74943 Length=1779 Score = 86.0 bits (94), Expect = 5e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 135622 AGATGGACGCGATTCAAATGGCTACGTAGGTTGTATGTGGTCTATTTGCGGTGTACACGA 135681 ||||||||| || | ||||||||||| || || |||| | || |||| || || || Sbjct 1044 AGATGGACGTGACCCCAATGGCTACGTCGGCTGCGCGTGGGCCATCGGCGGCGTGCATGA 1103 Query 135682 TCAAGGATGGAAGGAGCGCAAAGTGTTTGGCAAGATTCGCTATATGAACTATGACGGTTG 135741 || || ||||||||||| |||||||||||| | ||||| |||||||| | ||| || Sbjct 1104 CCAGGGCTGGAAGGAGCGGCCCGTGTTTGGCAAGGTGCGCTACATGAACTACGCCGGCTG 1163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434488657128960