Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F000826285.1_202015-01- 07] 79,048 sequences; 66,025,675 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq68661 113 6e-20 >seq68661 Length=10605 Score = 113 bits (124), Expect = 6e-20 Identities = 350/542 (65%), Gaps = 6/542 (1%) Strand=Plus/Plus Query 46645 TGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCA 46704 || ||||| || || | || || | ||||| || || | ||| || ||||| || || Sbjct 2263 TGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGCGAGGCCGGGCATGAGACCG 2322 Query 46705 CGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCC 46764 || || |||||||| || || | ||| || || || ||||| ||||| || || || Sbjct 2323 CGTTTCTTGAGCCAGAAGATGGAACAGAAGGAGCCCGAGAAGAAGATGCCCTCGACTGCG 2382 Query 46765 GCGAATGCGACAAGTCTCTCTCCGTAACTGGCA------TCATTATGAATCCACCTTTGA 46818 || || | || || | ||| | | || || || || | ||||| | Sbjct 2383 GCAAACCCAACGAGGCGCTCGGCAAAGGTGTCAACGCCCTCCTTGTTGATCCATCGCATC 2442 Query 46819 GCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttt 46878 ||||| || ||||| ||||| || | |||| ||||| || ||||| |||||| | Sbjct 2443 GCCCACTCGGCCTTCTTCTTCACCGAGGGCACCGTTTCGATGGCATTGAAGAGATGGGCC 2502 Query 46879 ttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATG 46938 || || | || || || || ||||| | | || || | ||||| || ||| Sbjct 2503 TTCTCGACGGGGTCCTTGACGTAGGTATCCAGGAGGAGCGAGTAGGTCTCTGAGTGGATG 2562 Query 46939 TTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTA 46998 || || || || || || || || || || |||| ||| || | | || |||||| | Sbjct 2563 TTCTCGATGGCGATTTGGAAGCCATAGAAGCATCGTGCCTCGGGCACTTGCACCTCTTTC 2622 Query 46999 CAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAAT 47058 || || | | ||| ||||| ||| || || || ||||| ||||| ||||||| Sbjct 2623 ATGAAGCGACCGGCCAAGTTCTCCGCCACAATGCCGTCGCTAGCGGCAAAGAATGCCAGA 2682 Query 47059 ACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTT 47118 || || || || || | | ||| || | | || | ||||| || || || | Sbjct 2683 ACGTGCTTGATGAAGTGCTGTTCGTCAGCTGAGAGAGATTGCCAGTGCTTCATGTCGTCG 2742 Query 47119 GATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCAT 47178 | ||| || || || ||||||||||| || ||||| || || || ||||| | ||| Sbjct 2743 CCGAGATCGACCTCCTCGGCTGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTCCCAG 2802 Query 47179 AT 47180 || Sbjct 2803 AT 2804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712229949519360