Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq2671 131 2e-25 >seq2671 Length=7052 Score = 131 bits (144), Expect = 2e-25 Identities = 365/560 (65%), Gaps = 9/560 (2%) Strand=Plus/Plus Query 16985 CCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTC 17044 |||||||| | |||||| || ||||| || || | | |||||||| || |||||| Sbjct 3014 CCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGCGAGGCCGGGCATGAGACCGCGTTTC 3073 Query 17045 TTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAAC 17104 || | ||| || || | ||| || || || ||||| || |||||||| | || ||| Sbjct 3074 TTGAGCCAGAAGATGGAACAGAAGGAGCCCGAGAAGAAGATGCCCTCGACTGCGGCGAAC 3133 Query 17105 GCGATTAATCGTTCGGCGTACGTCGCG------TCTTTGTTACGAATCCATTTCTGCACC 17158 | | | || ||||| | || || || ||||| |||||| | | || Sbjct 3134 CCAACGAGGCGCTCGGCAAAGGTGTCGACGCCCTCCTTGTTG---ATCCATCGCATCGCC 3190 Query 17159 CACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTT 17218 |||||||| || | ||| | | || |||||| ||||| || || | | | || Sbjct 3191 CACTCGGCCTTCTTCTTCACCGAGGGCACCGTTTCGATGGCATTGAAGAGATGGGCCTTC 3250 Query 17219 TCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTC 17278 || |||| | | || ||||| | ||| || ||| | || ||||| |||||| Sbjct 3251 TCGACGGGGTCCTTGACGTAGGTATCCAGGAGGAGCGAGTAGGTCTCTGAGTGGATGTTC 3310 Query 17279 TCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAG 17338 || |||||||| || || || || |||||||| || || | | ||| || || | Sbjct 3311 TCGATGGCTATTTGGAAGCCATAGAAGCATCGTGCCTCGGGCACTTGCACCTCTTTCATG 3370 Query 17339 AATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATA 17398 || || | || | || || ||| ||||||||||| ||||| || || |||| | Sbjct 3371 AAGCGACCGGCCAAGTTCTCCGCCACAATGCCGTCGCTAGCGGCAAAGAATGCCAGAACG 3430 Query 17399 TGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGAT 17458 ||||| ||||| | | |||||| | || ||| |||||| ||| | || | | Sbjct 3431 TGCTTGATGAAGTGCTGTTCGTCAGCTGAGAGAGATTGCCAGTGCTTCATGTCGTCGCCG 3490 Query 17459 ATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATA 17518 | ||| || || |||| ||||| || ||| | ||||| || ||||| | ||| || Sbjct 3491 AGATCGACCTCCTCGGCTGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTCCCAGATG 3550 Query 17519 TCATTGTATTGTATGGGGAA 17538 | ||| | |||||||| Sbjct 3551 CGCTGGTAGCGGATGGGGAA 3570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517242842293320