Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq2671 113 5e-20 seq8173 104 2e-17 seq11040 91.5 2e-13 >seq2671 Length=7052 Score = 113 bits (124), Expect = 5e-20 Identities = 180/257 (70%), Gaps = 6/257 (2%) Strand=Plus/Plus Query 16502 TCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATT 16561 |||||||| |||||||| |||||||| || || |||||||||||||| ||||| | | | Sbjct 3296 TCTGAGTGGATGTTCTCGATGGCTATTTGGAAGCCATAGAAGCATCGTGCCTCGGGCACT 3355 Query 16562 TGTA---CTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCA 16618 || | ||| || | || || | |||| |||||| ||| || ||||| || || Sbjct 3356 TGCACCTCTTTCATG---AAGCGACCGGCCAAGTTCTCCGCCACAATGCCGTCGCTAGCG 3412 Query 16619 GCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAA 16678 ||||| || |||| | |||||| ||||| | | |||||||| || ||| ||||| Sbjct 3413 GCAAAGAATGCCAGAACGTGCTTGATGAAGTGCTGTTCGTCAGCTGAGAGAGATTGCCAG 3472 Query 16679 TCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTT 16738 | || | || | | | ||| || || || | ||||| ||| ||| | ||||| Sbjct 3473 TGCTTCATGTCGTCGCCGAGATCGACCTCCTCGGCTGTCCAGAAGGAGGCCTCGGCCTTC 3532 Query 16739 TTATACATTTTCCAAAT 16755 || ||||| | ||| || Sbjct 3533 TTGTACATCTCCCAGAT 3549 >seq8173 Length=3122 Score = 104 bits (114), Expect = 2e-17 Identities = 304/465 (65%), Gaps = 5/465 (1%) Strand=Plus/Plus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 || || || |||||||| || || || ||||| | ||||||||| |||||| || | Sbjct 1521 AGGCAAGCAAAGTCGCAGTGCAGACCCTCGTCGCGGCTGATAAGCTCGTTGCTGAAGGCA 1580 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAA 16317 | || ||||| || || ||||| | |||||| || | |||| || || || || || Sbjct 1581 AGACCGGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGG-AGCAGAAAGAGCCGGAGAA 1639 Query 16318 GAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGC---ATCTTT 16374 ||| || ||||| || | || || |||| | || || | | | || | | | | Sbjct 1640 GAAGATGCCCTCGACCGCGGCGAAGCCGATGAGACGCTCGGGGAAGGTCTCGACACCCTC 1699 Query 16375 ATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTAT 16434 || | |||||| | |||| ||||| || | || | | || || || || Sbjct 1700 CTTGCAAATCCAGCGCATGGCCCACTCGGCCTTCTTCTTCACCGAGGGCACAGTCTCCAT 1759 Query 16435 GGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACT 16494 |||| || | | || || || ||| | | || || || || || | Sbjct 1760 GGCCCGGAAGAGGTGGTCCTTCTCGATCGGATCTTTAACGTAGGTGTCGATGAGGAGCGA 1819 Query 16495 GTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTC 16554 ||||||||| ||||| |||||||| || || ||||| || || |||||||| || ||||| Sbjct 1820 GTACATTTCCGAGTGGATGTTCTCGATAGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTC 1879 Query 16555 CGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACT 16614 | | ||| |||||| || || | ||||||||||| ||||| || || || Sbjct 1880 GGGCACTTGCACTTCCTTCATGAAGCGGCCAGCCAGGTTCTCGGCGACGATGCCATCGCT 1939 Query 16615 TGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTC 16659 || || || || |||| | |||||| ||||| | || ||||| Sbjct 1940 GGCGGCGAAGAAGGCCAGCACGTGCTTGATGAAGTGCTTCTCGTC 1984 >seq11040 Length=1541 Score = 91.5 bits (100), Expect = 2e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 16495 GTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTC 16554 ||||||||| ||||| |||||||| || || ||||| || || |||||||| || ||||| Sbjct 1302 GTACATTTCCGAGTGGATGTTCTCGATAGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTC 1243 Query 16555 CGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACT 16614 | | || |||||| || || | ||||||||||| ||||| || || || Sbjct 1242 GGGCACCTGCACTTCCTTCATGAAGCGGCCAGCCAGGTTCTCGGCGACGATGCCATCGCT 1183 Query 16615 TGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTC 16659 || || || || |||| | |||||| ||||| | || ||||| Sbjct 1182 GGCGGCGAAGAAGGCCAGCACGTGCTTGATGAAGTGCTTCTCGTC 1138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511115228968680