Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq8173 114 2e-20 seq11040 96.9 4e-15 seq283 86.0 7e-12 >seq8173 Length=3122 Score = 114 bits (126), Expect = 2e-20 Identities = 370/564 (66%), Gaps = 18/564 (3%) Strand=Plus/Plus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || || || |||||||| ||||||||||| | || || | |||||| || | || Sbjct 1524 CAAGCAAAGTCGCAGTGCAGACCCTCGTCGCGGCTGATAAGCTCGTTGCTGAAGGCAAGA 1583 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 24253 |||||||| ||||| ||||| || ||||| || ||||| ||| || || || || ||||| Sbjct 1584 CCGGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAAGAGCCGGAGAAGAA 1642 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTC--------TC-CATAACCGGCGCT 24304 || || || || || || ||| | || || | || || | ||| | || Sbjct 1643 GATGCCCTCGACCGCGGCGAAGCCGATGAGACGCTCGGGGAAGGTCTCGACACCCTC-CT 1701 Query 24305 GTCATGTATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 24363 || ||||| | || ||||| ||||||||||| || || | |||| ||||| | Sbjct 1702 TGCA--AATCCAGCGCATG-GCCCACTCGGCCTTCTTCTTCACCGAGGGCACAGTCTCCA 1758 Query 24364 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 24423 | || ||||| | || || || | ||||||||| || || || || | || Sbjct 1759 TGGCCCGGAAGAGGTGGTCCTTCTCGATCGGATCTTTAACGTAGGTGTCGATGAGGAGCG 1818 Query 24424 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCT 24483 ||||||||||| || ||||| || || || || || || |||||||| || | |||| Sbjct 1819 AGTACATTTCCGAGTGGATGTTCTCGATAGCGATCTGGAAGCCGTAGAAGCAGCGCGCCT 1878 Query 24484 CGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCAC 24543 ||| | || ||||| | || || | || | || || || || || || | Sbjct 1879 CGGGCACTTGCACTTCCTTCATGAAGCGGCCAGCCAGGTTCTCGGCGACGATGCCATCGC 1938 Query 24544 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTG-TTAGTTTA 24602 |||| || || || |||| || || || || || | || ||||| | || | || | Sbjct 1939 TGGCGGCGAAGAAGGCCAGCACGTGCTTGATGAAGTGCTTCTCGTC-GTTGCTGAGCGAA 1997 Query 24603 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 24662 ||| | || || || | ||| || || || | ||||| || || ||||| Sbjct 1998 GCCCAGTGCTTCATGTCGGCGCTCAAATCGACCTCCTCGGCGGTCCAGAACGAGGCCTCG 2057 Query 24663 GCCTTTTTATACATATTCCAGATG 24686 ||||| || ||||| | ||| ||| Sbjct 2058 GCCTTCTTGTACATCTCCCAAATG 2081 >seq11040 Length=1541 Score = 96.9 bits (106), Expect = 4e-15 Identities = 331/507 (65%), Gaps = 18/507 (4%) Strand=Plus/Minus Query 24192 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAA 24250 || |||||||| ||||| ||||| || ||||| || ||||| ||| || || || || || Sbjct 1541 AGACCGGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAAGAGCCGGAGAA 1483 Query 24251 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTC--------TCCATA-ACCGGC 24301 ||| || || || || || || ||| | || || | || || | ||| | Sbjct 1482 GAAGATGCCCTCGACCGCGGCGAAGCCGATGAGACGCTCGGGGAAGGTCTCGACACCCTC 1423 Query 24302 GCTGTCATGTATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCT 24360 || | ||||| | || ||||| ||||||||||| || || | |||| |||| Sbjct 1422 CTTGCAA---ATCCAGCGCATG-GCCCACTCGGCCTTCTTCTTCACCGAGGGCACAGTCT 1367 Query 24361 CTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAA 24420 | || || ||||| | || || || | ||||||||| || || || || | | Sbjct 1366 CCATGGCCCGGAAGAGGTGGTCCTTCTCGATCGGATCTTTAACGTAGGTGTCGATGAGGA 1307 Query 24421 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAG 24480 | ||||||||||| || ||||| || || || || || || |||||||| || | | Sbjct 1306 GCGAGTACATTTCCGAGTGGATGTTCTCGATAGCGATCTGGAAGCCGTAGAAGCAGCGCG 1247 Query 24481 CCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGT 24540 |||||| | ||| ||||| | || || | || | || || || || || | Sbjct 1246 CCTCGGGCACCTGCACTTCCTTCATGAAGCGGCCAGCCAGGTTCTCGGCGACGATGCCAT 1187 Query 24541 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGT 24599 | ||||| || || || |||| || || || || || | || ||||| | |||| || Sbjct 1186 CGCTGGCGGCGAAGAAGGCCAGCACGTGCTTGATGAAGTGCTTCTCGTC-GTTGTTGAGC 1128 Query 24600 TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC 24659 | ||| | || || || | ||| || || || | ||||| || || ||| Sbjct 1127 GAAGCCCAGTGCTTCATGTCGGCGCTCAAATCGACCTCCTCGGCGGTCCAGAACGAGGCC 1068 Query 24660 TCTGCCTTTTTATACATATTCCAGATG 24686 || ||||| || ||||| | ||| ||| Sbjct 1067 TCGGCCTTCTTGTACATCTCCCAAATG 1041 >seq283 Length=14928 Score = 86.0 bits (94), Expect = 7e-12 Identities = 95/123 (77%), Gaps = 3/123 (2%) Strand=Plus/Minus Query 24156 CCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 24215 || || |||| |||||| | ||||||||||| | ||| |||||||| || || ||||| Sbjct 2990 CCTTCATCTCGACTAATGAGCTCGTTGGAAAAGGCGAGGCCGGGCATGAGTCCGCGCTTC 2931 Query 24216 TTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAA 24274 || |||| ||| ||||| ||| || || ||||| ||||| || || || || || ||||| Sbjct 2930 TTGAGCC-AAAGATGGA-GCAGAAGGAGCCAGAGAAGAAGATGCCCTCGACGGCGGCAAA 2873 Query 24275 GGC 24277 || Sbjct 2872 CGC 2870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593374280285520