Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq960 165 2e-35 seq18213 149 1e-30 seq8636 96.9 7e-15 seq2163 96.9 7e-15 >seq960 Length=8959 Score = 165 bits (182), Expect = 2e-35 Identities = 404/609 (66%), Gaps = 5/609 (1%) Strand=Plus/Plus Query 248833 TTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATT 248892 || || || || ||| || || ||| || || || | ||||||||| || || Sbjct 7413 TTTAAGACCCTCGAGCGGTCTTACCTCTTCCGGATCGACGACAAGATCGTCGAGCGCCCC 7472 Query 248893 CAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTC 248952 ||||||||| | ||||| || || ||||| |||||| ||| |||| ||| || Sbjct 7473 CAGCACATGCTCATGCGTGTTGCCGTCGGTCTTCACATGGACAACATCCCCGCCGTCATC 7532 Query 248953 GAGACGTACACCGGAATGAGTGAAC-GCTGGATGACACATGCCACACCGACGCTCTTCAA 249011 ||||| ||| | | ||| ||| | || || ||||||||||| |||||||| Sbjct 7533 GAGACCTACGACTTGCTCTCGCAACAGCTCT-TCACCCACGCCACACCGACCCTCTTCAA 7591 Query 249012 CGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTC 249071 |||||| ||| | | ||||| |||||||| || || ||||| | || ||||| Sbjct 7592 CGCCGGCACCCCCCGCCCGCAGCTTTCGTCGTGCTTCCTCCTCACCATGAAGGAGGACTC 7651 Query 249072 TGTCGACGGCATTTATGACACGCTTAAACAGACGGCGAAGATTTCTAAATTCGCGGGCGG 249131 |||| || || || |||||||| || ||| || || || || | || ||||| Sbjct 7652 GATCGAGGGTATCTACGACACGCTCAAGCAGTGCGCCCTCATCTCCAAGTCAGCTGGCGG 7711 Query 249132 AATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGG 249191 ||||| || | | | | |||||| || |||||||| || || || || Sbjct 7712 TATCGGCGTCGCTGCCCACCGCATCCGCGCCTCCAACTCGTACATTCGCGGCACCAACGG 7771 Query 249192 GGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAA 249251 | | ||| |||| || | || || || | ||| ||| | | | || | Sbjct 7772 CACCTCGAACGGTCTCGTCCCGATGCTGCGCGTCTACAACGACACTGCCCGCTACGTCGA 7831 Query 249252 CCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGA 249308 ||||| ||| || || ||||| | || ||||| ||| | || |||||||||||| Sbjct 7832 CCAGGGCGGCGGCAAGCGCAAGGGCGCCTTTGCCATCTATCTCGAGCCGTGGCACGCCGA 7891 Query 249309 TATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGA 249368 || || || || |||| | || |||||| ||||||| ||| | | || || || Sbjct 7892 CATCTTTGACTTTTTGGAGCTCAAGAAGAACCACGGCAAGGAGGAGAACCGCGCTCGCGA 7951 Query 249369 CCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGA 249428 ||||||||||||||||||| || ||||| | |||||| |||||| || | | |||||| Sbjct 7952 CCTCTTCTACGGCCTGTGGATCCCCGACCTCTTCATGAAGCGCGTCGAGTCTGGCGGCGA 8011 Query 249429 TTGGACGCT 249437 ||| |||| Sbjct 8012 CTGGTCGCT 8020 >seq18213 Length=2148 Score = 149 bits (164), Expect = 1e-30 Identities = 401/609 (66%), Gaps = 6/609 (1%) Strand=Plus/Minus Query 248833 TTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATT 248892 || || || || ||| || || ||| || || || | ||||||||| || || Sbjct 724 TTTAAGACCCTCGAGCGGTCTTACCTCTTCCGGATCGACGACAAGATCGTCGAGCGCCCC 665 Query 248893 CAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTC 248952 ||||||||| | ||||| || || ||||| |||||| ||| |||| ||| || Sbjct 664 CAGCACATGCTCATGCGTGTTGCCGTCGGTCTTCACATGGACAACATCCCCGCCGTCATC 605 Query 248953 GAGACGTACACCGGAATGAGTGAAC-GCTGGATGACACATGCCACACCGACGCTCTTCAA 249011 ||||| ||| | | ||| ||| | || || ||||| || || |||||||| Sbjct 604 GAGACCTACGACTTGCTCTCGCAACAGCTCT-TCACCCACGCCACGCCCACCCTCTTCAA 546 Query 249012 CGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTC 249071 |||||| ||| | | ||||| |||||||| || || ||||| | || ||||| Sbjct 545 CGCCGGCACCCCCCGCCCACAGCTTTCGTCGTGCTTCCTCCTCACCATGAAGGAGGACTC 486 Query 249072 TGTCGACGGCATTTATGACACGCTTAAACAGACGGCGAAGATTTCTAAATTCGCGGGCGG 249131 |||| || || || |||||||| || ||| || || || || | || ||||| Sbjct 485 GATCGAGGGTATCTACGACACGCTCAAGCAGTGCGCCCTCATCTCCAAGTCAGCTGGCGG 426 Query 249132 AATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGG 249191 ||||| || | | | | |||||| || |||||||| || || || || Sbjct 425 TATCGGCGTCGCTGCCCACCGCATCCGCGCCTCCAACTCGTACATTCGCGGCACCAACGG 366 Query 249192 GGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAA 249251 | || || |||| || | || || || | ||| ||| | | | || | Sbjct 365 CACCTC-GAACGTCTCGTCCCGATGCTGCGCGTCTACAACGACACTGCCCGCTACGTCGA 307 Query 249252 CCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGA 249308 ||||| ||| || || ||||| | || ||||| || | || |||||||||||| Sbjct 306 CCAGGGCGGCGGCAAGCGCAAGGGCGCCTTTGCCATCTACCTCGAGCCGTGGCACGCCGA 247 Query 249309 TATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGA 249368 || || || || |||| | || |||||| ||||||| ||| | | || || || Sbjct 246 CATCTTTGACTTTTTGGAGCTCAAGAAGAACCACGGCAAGGAGGAGAACCGCGCTCGCGA 187 Query 249369 CCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGA 249428 ||||||||||||||||||| || ||||| | |||||| |||||| || | | |||||| Sbjct 186 CCTCTTCTACGGCCTGTGGATCCCCGACCTCTTCATGAAGCGCGTCGAGTCTGGCGGCGA 127 Query 249429 TTGGACGCT 249437 ||| |||| Sbjct 126 CTGGTCGCT 118 >seq8636 Length=5349 Score = 96.9 bits (106), Expect = 7e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 254202 TGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAG 254261 || ||||| | ||||||| | ||||| || ||||| || |||||||| ||||||||||| Sbjct 120 TGCCCGCCCTACAAGCTCATCATCCTTGATGAGGCCGATTCCATGACGCCCGACGCGCAG 179 Query 254262 TCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGC 254321 |||||||||| || | || |||| |||| || ||||| || ||| || | ||| Sbjct 180 GCCGCCCTCCGACGCATCATCGAGAACTACTCTCGAGTCACGCGCTTCTGCTTGATCTGC 239 Query 254322 AACTACGT 254329 |||||||| Sbjct 240 AACTACGT 247 >seq2163 Length=2559 Score = 96.9 bits (106), Expect = 7e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 254202 TGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAG 254261 || ||||| | ||||||| | ||||| || ||||| || |||||||| ||||||||||| Sbjct 1504 TGCCCGCCCTACAAGCTCATCATCCTTGATGAGGCCGATTCCATGACGCCCGACGCGCAG 1563 Query 254262 TCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGC 254321 |||||||||| || | || |||| |||| || ||||| || ||| || | ||| Sbjct 1564 GCCGCCCTCCGACGTATCATCGAGAACTACTCTCGAGTCACGCGCTTCTGCTTGATCTGC 1623 Query 254322 AACTACGT 254329 |||||||| Sbjct 1624 AACTACGT 1631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073122556580032