Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq8173 150 2e-31 seq11040 134 2e-26 >seq8173 Length=3122 Score = 150 bits (166), Expect = 2e-31 Identities = 387/583 (66%), Gaps = 16/583 (3%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || || |||||||||||||||||||| | || || | ||||| || | || Sbjct 1524 CAAGCAAAGTCGCAGTGCAGACCCTCGTCGCGGCTGATAAGCTCGTTGCTGAAGGCAAGA 1583 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 |||||||| ||||| ||||| || ||||| || ||||| ||| || ||||| |||||| Sbjct 1584 CCGGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAAGAGCCGGAGAAGAAG 1643 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTC--------TCCATA-ACCGGCGCTG 33752 || || || || || || ||| | || || | ||| || | ||| | || Sbjct 1644 ATGCCCTCGACCGCGGCGAAGCCGATGAGACGCTCGGGGAAGGTCTCGACACCCTCCTTG 1703 Query 33753 TCATGTATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 33811 | ||||| | || ||||| ||||||||||| || || | |||| || || || Sbjct 1704 CAA---ATCCAGCGCATG-GCCCACTCGGCCTTCTTCTTCACCGAGGGCACAGTCTCCAT 1759 Query 33812 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACT 33871 ||| ||||| | || || || | ||||||||| || || ||||| | || Sbjct 1760 GGCCCGGAAGAGGTGGTCCTTCTCGATCGGATCTTTAACGTAGGTGTCGATGAGGAGCGA 1819 Query 33872 ATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 33931 ||||||||||| || ||||| || || || ||||| || |||||||| || | ||||| Sbjct 1820 GTACATTTCCGAGTGGATGTTCTCGATAGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTC 1879 Query 33932 GGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACT 33991 || | |||||||| | || || | || | || || || || ||||| || Sbjct 1880 GGGCACTTGCACTTCCTTCATGAAGCGGCCAGCCAGGTTCTCGGCGACGATGCCATCGCT 1939 Query 33992 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTG-TTAGTTTAT 34050 ||| || || || |||| || || || || || | || ||||| | || | || | Sbjct 1940 GGCGGCGAAGAAGGCCAGCACGTGCTTGATGAAGTGCTTCTCGTC-GTTGCTGAGCGAAG 1998 Query 34051 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 34110 ||| | || || || | ||| || || || | ||||| || || ||||| | Sbjct 1999 CCCAGTGCTTCATGTCGGCGCTCAAATCGACCTCCTCGGCGGTCCAGAACGAGGCCTCGG 2058 Query 34111 CCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAA 34153 |||| || ||||| | ||| ||| || || |||| ||||| Sbjct 2059 CCTTCTTGTACATCTCCCAAATGCGCTGGTAGCGGATGGGGAA 2101 >seq11040 Length=1541 Score = 134 bits (148), Expect = 2e-26 Identities = 349/526 (66%), Gaps = 16/526 (3%) Strand=Plus/Minus Query 33639 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAG 33698 || |||||||| ||||| ||||| || ||||| || ||||| ||| || ||||| ||| Sbjct 1541 AGACCGGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAAGAGCCGGAGAAG 1482 Query 33699 AAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTC--------TCCATA-ACCGGCG 33749 ||||| || || || || || ||| | || || | ||| || | ||| | Sbjct 1481 AAGATGCCCTCGACCGCGGCGAAGCCGATGAGACGCTCGGGGAAGGTCTCGACACCCTCC 1422 Query 33750 CTGTCATGTATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 33808 || | ||||| | || ||||| ||||||||||| || || | |||| || || Sbjct 1421 TTGCAA---ATCCAGCGCATG-GCCCACTCGGCCTTCTTCTTCACCGAGGGCACAGTCTC 1366 Query 33809 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAG 33868 ||||| ||||| | || || || | ||||||||| || || ||||| | || Sbjct 1365 CATGGCCCGGAAGAGGTGGTCCTTCTCGATCGGATCTTTAACGTAGGTGTCGATGAGGAG 1306 Query 33869 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGC 33928 ||||||||||| || ||||| || || || ||||| || |||||||| || | || Sbjct 1305 CGAGTACATTTCCGAGTGGATGTTCTCGATAGCGATCTGGAAGCCGTAGAAGCAGCGCGC 1246 Query 33929 CTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATC 33988 ||||| | ||||||||| | || || | || | || || || || ||||| Sbjct 1245 CTCGGGCACCTGCACTTCCTTCATGAAGCGGCCAGCCAGGTTCTCGGCGACGATGCCATC 1186 Query 33989 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTT 34047 ||||| || || || |||| || || || || || | || ||||| | |||| || Sbjct 1185 GCTGGCGGCGAAGAAGGCCAGCACGTGCTTGATGAAGTGCTTCTCGTC-GTTGTTGAGCG 1127 Query 34048 TATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 34107 | ||| | || || || | ||| || || || | ||||| || || |||| Sbjct 1126 AAGCCCAGTGCTTCATGTCGGCGCTCAAATCGACCTCCTCGGCGGTCCAGAACGAGGCCT 1067 Query 34108 CTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAA 34153 | ||||| || ||||| | ||| ||| || || |||| ||||| Sbjct 1066 CGGCCTTCTTGTACATCTCCCAAATGCGCTGGTAGCGGATGGGGAA 1021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629449164576720