Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq8173 120 4e-22 seq11040 100 4e-16 seq283 86.0 8e-12 >seq8173 Length=3122 Score = 120 bits (132), Expect = 4e-22 Identities = 369/562 (66%), Gaps = 14/562 (2%) Strand=Plus/Plus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || || || |||||||| ||||||||||| | || || | |||||| || | || Sbjct 1524 CAAGCAAAGTCGCAGTGCAGACCCTCGTCGCGGCTGATAAGCTCGTTGCTGAAGGCAAGA 1583 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 36276 |||||||| ||||| ||||| || ||||| || ||||| ||| || || || || ||||| Sbjct 1584 CCGGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAAGAGCCGGAGAAGAA 1642 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCAT- 36332 || || || || || || ||| | || || | ||| | || ||| || | Sbjct 1643 GATGCCCTCGACCGCGGCGAAGCCGATGAGACGCTCGGGGAAGGTCTCGACACCCTCCTT 1702 Query 36333 --GTATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 36389 ||||| | || ||||| ||||||||||| || || | |||| ||||| || | Sbjct 1703 GCAAATCCAGCGCATG-GCCCACTCGGCCTTCTTCTTCACCGAGGGCACAGTCTCCATGG 1761 Query 36390 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 36449 | ||||| | || || || | ||||||||| || || || || | || | Sbjct 1762 CCCGGAAGAGGTGGTCCTTCTCGATCGGATCTTTAACGTAGGTGTCGATGAGGAGCGAGT 1821 Query 36450 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 36509 |||||||||| || ||||| || || || || || || |||||||| || | ||||||| Sbjct 1822 ACATTTCCGAGTGGATGTTCTCGATAGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGG 1881 Query 36510 TAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 36569 | || ||||| | || || | || | || || || || || || |||| Sbjct 1882 GCACTTGCACTTCCTTCATGAAGCGGCCAGCCAGGTTCTCGGCGACGATGCCATCGCTGG 1941 Query 36570 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT--TTGGTGTTAGTTTATT 36627 | || || || |||| || || || || || | || |||| ||| || || | Sbjct 1942 CGGCGAAGAAGGCCAGCACGTGCTTGATGAAGTGCTTCTCGTCGTTGCTG--AGCGAAGC 1999 Query 36628 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 36687 ||| | || || || | ||| || || || | ||||| || || ||||| || Sbjct 2000 CCAGTGCTTCATGTCGGCGCTCAAATCGACCTCCTCGGCGGTCCAGAACGAGGCCTCGGC 2059 Query 36688 CTTTTTATACATATTCCAGATG 36709 ||| || ||||| | ||| ||| Sbjct 2060 CTTCTTGTACATCTCCCAAATG 2081 >seq11040 Length=1541 Score = 100 bits (110), Expect = 4e-16 Identities = 330/504 (65%), Gaps = 12/504 (2%) Strand=Plus/Minus Query 36215 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAA 36273 || |||||||| ||||| ||||| || ||||| || ||||| ||| || || || || || Sbjct 1541 AGACCGGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAAGAGCCGGAGAA 1483 Query 36274 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGTC 36330 ||| || || || || || || ||| | || || | ||| | || ||| || Sbjct 1482 GAAGATGCCCTCGACCGCGGCGAAGCCGATGAGACGCTCGGGGAAGGTCTCGACACCCTC 1423 Query 36331 ATGT---ATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 36386 | ||||| | || ||||| ||||||||||| || || | |||| ||||| | Sbjct 1422 CTTGCAAATCCAGCGCATG-GCCCACTCGGCCTTCTTCTTCACCGAGGGCACAGTCTCCA 1364 Query 36387 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 36446 | || ||||| | || || || | ||||||||| || || || || | || Sbjct 1363 TGGCCCGGAAGAGGTGGTCCTTCTCGATCGGATCTTTAACGTAGGTGTCGATGAGGAGCG 1304 Query 36447 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCT 36506 ||||||||||| || ||||| || || || || || || |||||||| || | |||| Sbjct 1303 AGTACATTTCCGAGTGGATGTTCTCGATAGCGATCTGGAAGCCGTAGAAGCAGCGCGCCT 1244 Query 36507 CGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCAC 36566 ||| | ||| ||||| | || || | || | || || || || || || | Sbjct 1243 CGGGCACCTGCACTTCCTTCATGAAGCGGCCAGCCAGGTTCTCGGCGACGATGCCATCGC 1184 Query 36567 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTT-AGTTTA 36625 |||| || || || |||| || || || || || | || ||| | | |||| || | Sbjct 1183 TGGCGGCGAAGAAGGCCAGCACGTGCTTGATGAAGTGCTTCTCG-TCGTTGTTGAGCGAA 1125 Query 36626 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 36685 ||| | || || || | ||| || || || | ||||| || || ||||| Sbjct 1124 GCCCAGTGCTTCATGTCGGCGCTCAAATCGACCTCCTCGGCGGTCCAGAACGAGGCCTCG 1065 Query 36686 GCCTTTTTATACATATTCCAGATG 36709 ||||| || ||||| | ||| ||| Sbjct 1064 GCCTTCTTGTACATCTCCCAAATG 1041 >seq283 Length=14928 Score = 86.0 bits (94), Expect = 8e-12 Identities = 95/123 (77%), Gaps = 3/123 (2%) Strand=Plus/Minus Query 36179 CCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 36238 || || |||| |||||| | ||||||||||| | ||| |||||||| || || ||||| Sbjct 2990 CCTTCATCTCGACTAATGAGCTCGTTGGAAAAGGCGAGGCCGGGCATGAGTCCGCGCTTC 2931 Query 36239 TTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAA 36297 || |||| ||| ||||| ||| || || ||||| ||||| || || || || || ||||| Sbjct 2930 TTGAGCC-AAAGATGGA-GCAGAAGGAGCCAGAGAAGAAGATGCCCTCGACGGCGGCAAA 2873 Query 36298 GGC 36300 || Sbjct 2872 CGC 2870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657787777139160