Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq21360 93.3 4e-14 seq5953 91.5 1e-13 seq2350 91.5 1e-13 seq941 89.7 5e-13 seq23417 87.8 2e-12 seq1090 87.8 2e-12 seq11020 86.0 6e-12 seq3640 82.4 8e-11 seq283 82.4 8e-11 >seq21360 Length=1073 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/219 (70%), Gaps = 9/219 (4%) Strand=Plus/Minus Query 152763 TAGTACATGCCCGTCTTGAGGCCACGTTGCCAGCCGTACATGTGCACCGACGCCATCTTA 152822 ||||||||||||||||||||||| ||||| |||| | ||||| ||| | | ||| Sbjct 973 TAGTACATGCCCGTCTTGAGGCCCTTGCGCCAGGCGTAGAAGTGCATCGAGGTGAGCTTG 914 Query 152823 GCCAAAGTAGGGTCGGCCATGTACACGTTAAACGATTGACTTTGATCAATAAATGCGCCT 152882 || || | || ||| ||||||| ||||| | ||| || || || || || | || Sbjct 913 GCAAACGAGGGCTCGCCCATGTAGACGTTGAGCGACTGGCTCTGGTCGATGTAGGCCGAG 854 Query 152883 CTATCTGCTGCCATGTCGATCATGAATTTTCCGTTGTTGTGCCAGCATTCCCAGATTGTC 152942 | || || ||||||||||| |||| || | || | |||| ||||| | ||| Sbjct 853 CGGTCGGCGGCCATGTCGATGATGA------CG-CGCTGGGGCAGC--TCCCATACCGTC 803 Query 152943 ATGTACAGCTTTTTAATGTTGTCGGGAATTTCATCTATG 152981 |||| ||||| || |||| ||| || || || || ||| Sbjct 802 TTGTAGAGCTTCTTGATGTCGTCAGGGATCTCGTCGATG 764 >seq5953 Length=2772 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | ||| | || ||||| | || ||||| || || ||||| || ||| Sbjct 2468 GCCGCCACGCAGACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 2409 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || || | ||| || ||||| || || || |||| || || ||||| |||||||| Sbjct 2408 CAGGGTACGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGG 2349 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| || || || || | | || | ||||| | || ||| || Sbjct 2348 GATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGACTCGAC 2289 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | ||||||||||| | || || ||||| || ||||| Sbjct 2288 CTCGAGCGTAATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 2241 >seq2350 Length=2056 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | ||| | || ||||| | || ||||| || || ||||| || || Sbjct 65 GCCGCCACGCAGACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 124 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || |||||||| || ||||| |||| ||||| ||||| ||||| || Sbjct 125 GAGGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGCGG 184 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| || || || | | || | ||||| | || ||| || Sbjct 185 GATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCAATGGTGTCCGAGGACTCGAC 244 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | ||||||||||| | || || ||||| || ||||| Sbjct 245 CTCGAGCGTAATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 292 >seq941 Length=7582 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | || ||||| || || ||||| || ||| || || | ||| ||| Sbjct 7576 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGACCGTCCTCG 7517 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| || || || |||| || || ||||| ||||| || ||||| || ||||| | Sbjct 7516 AGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGG 7457 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || || || | | || | ||||| | || ||| ||||| | || | |||||| Sbjct 7456 ATCTTCTGCTTCACGTTCTCAATGGTGTCCGAGGACTCGACCTCGAGCGTAATGGTCTTG 7397 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | || || ||||| || ||||| Sbjct 7396 CCGGTGAGAGTCTTCACGAAGATCTGCAT 7368 >seq23417 Length=955 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | ||| | || | ||||| || ||||| || || ||||| || || Sbjct 825 GCCGCCACGCAGACGGAGGACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCAGC 766 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| ||| || ||||| || || || |||| || || ||||| ||||| || Sbjct 765 GAGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGG 706 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| || || || || | | || | ||||| | || ||| || Sbjct 705 GATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTCTCAATCGTGTCCGAGGACTCGAC 646 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || | ||||||||||| | || || ||||| || ||||| Sbjct 645 CTCAAGCGTAATGGTCTTGCCGGTGAGAGTCTTCACGAAGATCTGCAT 598 >seq1090 Length=10094 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | || | || ||||| | || ||||| || || ||||| || || Sbjct 7775 GCCGCCACGGAGGCGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 7834 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| ||| || ||||| || || || |||| || || ||||| ||||| || Sbjct 7835 GAGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGG 7894 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| |||||||| ||| || || || | | || | ||||| | || ||| || Sbjct 7895 GATGCCCTCTTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCCGAGGACTCGAC 7954 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | ||||||||||| | || || ||||| || ||||| Sbjct 7955 CTCGAGCGTAATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 8002 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || |||||||| || || || |||| ||||| ||||| || || || ||||| || ||| Sbjct 7392 TCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTG 7451 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || || | | || | ||||| | || ||| ||||| | || | Sbjct 7452 TCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCCGAGGACTCGACCTCGAGCGTAATG 7511 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||||||||||| || || ||||| || |||||| Sbjct 7512 GTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCATA 7547 >seq11020 Length=1763 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 |||||||| || || ||||| || || | || | ||| |||||||| || ||| Sbjct 291 GTAGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGGCCGTCCTCGAGCTGCTTGCCA 232 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| || || ||||| || || || ||||| || ||||| ||| || || || Sbjct 231 GCGAAGATAAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 172 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | |||||| | | ||| ||||| | || | ||||||||||||| || Sbjct 171 ACGTTCTCGATGGTGTCGCTCGACTCAACCTCGAGCGTAATGGTCTTGCCGGTCAGAGTC 112 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 111 TTGACGAAGATCTGCAT 95 >seq3640 Length=10544 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | ||| | || ||||| | || ||||| || || ||||| || || Sbjct 10440 GCCGCCACGCAGACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 10381 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | ||| || ||||| || || || |||| || || ||||| |||||||| Sbjct 10380 GAGGGTACGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGG 10321 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| || || || || | | || | ||||| | || ||| || Sbjct 10320 GATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTCTCAATGGTGTCCGAGGACTCGAC 10261 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | ||||||||||| | || || ||||| || ||||| Sbjct 10260 CTCGAGCGTAATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 10213 >seq283 Length=14928 Score = 82.4 bits (90), Expect = 8e-11 Identities = 153/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 52837 GAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGC 52896 || |||||||| ||||| || |||||| | || || | | || || || | | ||| Sbjct 3073 GAAGCCGTCGAGATTGAGAAGGAGTTTGTCACAGAATCGCTGCCGGTGTCGCTCATCGGC 3132 Query 52897 ATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATGCAG 52956 |||||||| | ||||| |||| ||||| || || || || | ||| || || Sbjct 3133 ATGAACGCCGGGCTCATGTGTCAGTATATCGAATTCGTGGCCGATCGCCTGCTGGTGGCC 3192 Query 52957 CTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATATCG 53016 ||||| || || |||| || | || ||||| ||| ||| | ||| || Sbjct 3193 CTCGGATGCCCCAAGCACTACAACTCAACGAATCCCTTCCCGTGGATGGAGCTCATCTCA 3252 Query 53017 CTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTAC 53061 ||||||||||| || ||||| || ||| || | |||||||||||| Sbjct 3253 CTCGAGGGCAAGACCAACTTCTTTGAGCGAAGAGTGGGCGAGTAC 3297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495773808760800