Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq8173 154 2e-32 seq11040 127 3e-24 seq283 109 8e-19 >seq8173 Length=3122 Score = 154 bits (170), Expect = 2e-32 Identities = 386/580 (67%), Gaps = 10/580 (2%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || |||||||||||||||||||| | || || || |||||| || | || Sbjct 1524 CAAGCAAAGTCGCAGTGCAGACCCTCGTCGCGGCTGATAAGCTCGTTGCTGAAGGCAAGA 1583 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 |||||||| ||||| ||||| || ||||| || ||||| ||| || || || || ||||| Sbjct 1584 CCGGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAAGAGCCGGAGAAGAA 1642 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACT---GGCGCTGTCAT- 50134 ||| || || || ||||| ||| | | || | ||| | | | | | || | Sbjct 1643 GATGCCCTCGACCGCGGCGAAGCCGATGAGACGCTCGGGGAAGGTCTCGACACCCTCCTT 1702 Query 50135 --GTATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 50191 ||||| | || ||||| ||||||||||| || || | |||| || || |||| Sbjct 1703 GCAAATCCAGCGCATG-GCCCACTCGGCCTTCTTCTTCACCGAGGGCACAGTCTCCATGG 1761 Query 50192 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 50251 | ||||| | || || || | ||||||||| || || ||||| | || | Sbjct 1762 CCCGGAAGAGGTGGTCCTTCTCGATCGGATCTTTAACGTAGGTGTCGATGAGGAGCGAGT 1821 Query 50252 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 50311 |||||||||| || ||||| || || || ||||| || |||||||| || | ||||||| Sbjct 1822 ACATTTCCGAGTGGATGTTCTCGATAGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGG 1881 Query 50312 TAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGG 50371 | |||||||| | || || |||| | || || || || || || |||| Sbjct 1882 GCACTTGCACTTCCTTCATGAAGCGGCCAGCCAGGTTCTCGGCGACGATGCCATCGCTGG 1941 Query 50372 CTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCC 50431 | || || || |||| || || || || || || || |||| | | || | || Sbjct 1942 CGGCGAAGAAGGCCAGCACGTGCTTGATGAAGTGCTTCTCGTCGTTGCTGAGCGAAGCCC 2001 Query 50432 AATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 50491 | | || || || | ||| || || || | ||||| || || ||||| |||| Sbjct 2002 AGTGCTTCATGTCGGCGCTCAAATCGACCTCCTCGGCGGTCCAGAACGAGGCCTCGGCCT 2061 Query 50492 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAA 50531 | || ||||| | ||| ||| || || |||| ||||| Sbjct 2062 TCTTGTACATCTCCCAAATGCGCTGGTAGCGGATGGGGAA 2101 >seq11040 Length=1541 Score = 127 bits (140), Expect = 3e-24 Identities = 348/524 (66%), Gaps = 12/524 (2%) Strand=Plus/Minus Query 50017 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAA 50075 || |||||||| ||||| ||||| || ||||| || ||||| ||| || || || || || Sbjct 1541 AGACCGGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAAGAGCCGGAGAA 1483 Query 50076 GAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG----CTGT 50131 |||||| || || || ||||| ||| | | || | ||| | | || | Sbjct 1482 GAAGATGCCCTCGACCGCGGCGAAGCCGATGAGACGCTCGGGGAAGGTCTCGACACCCTC 1423 Query 50132 CATGTA--TCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 50188 | || | |||| | || ||||| ||||||||||| || || | |||| || || | Sbjct 1422 CTTGCAAATCCAGCGCATG-GCCCACTCGGCCTTCTTCTTCACCGAGGGCACAGTCTCCA 1364 Query 50189 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 50248 |||| ||||| | || || || | ||||||||| || || ||||| | || Sbjct 1363 TGGCCCGGAAGAGGTGGTCCTTCTCGATCGGATCTTTAACGTAGGTGTCGATGAGGAGCG 1304 Query 50249 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 50308 ||||||||||| || ||||| || || || ||||| || |||||||| || | |||| Sbjct 1303 AGTACATTTCCGAGTGGATGTTCTCGATAGCGATCTGGAAGCCGTAGAAGCAGCGCGCCT 1244 Query 50309 CGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCAC 50368 ||| | ||||||||| | || || |||| | || || || || || || | Sbjct 1243 CGGGCACCTGCACTTCCTTCATGAAGCGGCCAGCCAGGTTCTCGGCGACGATGCCATCGC 1184 Query 50369 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTT-AGTTTA 50427 |||| || || || |||| || || || || || || || ||| | | |||| || | Sbjct 1183 TGGCGGCGAAGAAGGCCAGCACGTGCTTGATGAAGTGCTTCTCG-TCGTTGTTGAGCGAA 1125 Query 50428 TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCT 50487 ||| | || || || | ||| || || || | ||||| || || ||||| Sbjct 1124 GCCCAGTGCTTCATGTCGGCGCTCAAATCGACCTCCTCGGCGGTCCAGAACGAGGCCTCG 1065 Query 50488 GCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAA 50531 ||||| || ||||| | ||| ||| || || |||| ||||| Sbjct 1064 GCCTTCTTGTACATCTCCCAAATGCGCTGGTAGCGGATGGGGAA 1021 >seq283 Length=14928 Score = 109 bits (120), Expect = 8e-19 Identities = 191/273 (70%), Gaps = 9/273 (3%) Strand=Plus/Minus Query 49975 TGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCA 50034 |||| || || |||| |||||| || ||||||||||| | ||| |||||||| || || Sbjct 2996 TGCATCCCTTCATCTCGACTAATGAGCTCGTTGGAAAAGGCGAGGCCGGGCATGAGTCCG 2937 Query 50035 CGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAAGATTCCTTCTACTGC 50093 ||||| || |||| ||| ||||| ||| || || ||||| |||||||| || || || || Sbjct 2936 CGCTTCTTGAGCC-AAAGATGGA-GCAGAAGGAGCCAGAGAAGAAGATGCCCTCGACGGC 2879 Query 50094 GGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG---CTGTCAT---GTATCCACTTTTG 50147 |||||| || || || | || | || || | || | |||||||| | Sbjct 2878 GGCAAACGCCACGAGGCGTTCGGGGAATGTGTCGAGTCCCTCCTTGGCGATCCACTTGAG 2819 Query 50148 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtt 50207 ||||| |||||||| || || | |||| || || ||||| || ||||| | ||| Sbjct 2818 CGCCCACTCGGCCTTGCGCTTGACCGACGGCACGGTCTCGATGGCGTTGAAGAGGTGGTT 2759 Query 50208 tttttCATTACTATCTTTAACATAAGTATCGAT 50240 || || | |||||| || || || ||||| Sbjct 2758 CTTCTCCTGCGGATCTTTGACGTAGGTGTCGAT 2726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717848621730360