Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq8173 136 5e-27 seq11040 114 2e-20 seq283 91.5 2e-13 >seq8173 Length=3122 Score = 136 bits (150), Expect = 5e-27 Identities = 312/463 (67%), Gaps = 10/463 (2%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || || ||||||||||||||||| || | || || | |||||| || | || Sbjct 1524 CAAGCAAAGTCGCAGTGCAGACCCTCGTCGCGGCTGATAAGCTCGTTGCTGAAGGCAAGA 1583 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAA 42183 |||||||| ||||| ||||| || ||||| || || || ||| || || || || ||||| Sbjct 1584 CCGGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAAGAGCCGGAGAAGAA 1642 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGTCATG 42240 ||| || || || || || ||| | || || | ||| | || ||| || | Sbjct 1643 GATGCCCTCGACCGCGGCGAAGCCGATGAGACGCTCGGGGAAGGTCTCGACACCCTCCTT 1702 Query 42241 T---ATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 42296 ||||| | || ||||| ||||||||||| || || | |||| || || |||| Sbjct 1703 GCAAATCCAGCGCATG-GCCCACTCGGCCTTCTTCTTCACCGAGGGCACAGTCTCCATGG 1761 Query 42297 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTAT 42356 | ||||| | || || || | ||||||||| || || ||||| | || | Sbjct 1762 CCCGGAAGAGGTGGTCCTTCTCGATCGGATCTTTAACGTAGGTGTCGATGAGGAGCGAGT 1821 Query 42357 ACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGG 42416 ||||||| || || ||||| || || || ||||| || |||||||| || | ||||||| Sbjct 1822 ACATTTCCGAGTGGATGTTCTCGATAGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGG 1881 Query 42417 TAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGG 42476 || || ||||| | || || |||| | || ||| || || || || |||| Sbjct 1882 GCACTTGCACTTCCTTCATGAAGCGGCCAGCCAGGTTCTCGGCGACGATGCCATCGCTGG 1941 Query 42477 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC 42519 | || || || |||| || || || || || | || ||||| Sbjct 1942 CGGCGAAGAAGGCCAGCACGTGCTTGATGAAGTGCTTCTCGTC 1984 >seq11040 Length=1541 Score = 114 bits (126), Expect = 2e-20 Identities = 273/406 (67%), Gaps = 10/406 (2%) Strand=Plus/Minus Query 42122 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAA 42180 || |||||||| ||||| ||||| || ||||| || || || ||| || || || || || Sbjct 1541 AGACCGGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAAGAGCCGGAGAA 1483 Query 42181 GAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGTC 42237 |||||| || || || || || ||| | || || | ||| | || ||| || Sbjct 1482 GAAGATGCCCTCGACCGCGGCGAAGCCGATGAGACGCTCGGGGAAGGTCTCGACACCCTC 1423 Query 42238 ATGT---ATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 42293 | ||||| | || ||||| ||||||||||| || || | |||| || || | Sbjct 1422 CTTGCAAATCCAGCGCATG-GCCCACTCGGCCTTCTTCTTCACCGAGGGCACAGTCTCCA 1364 Query 42294 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGAC 42353 |||| ||||| | || || || | ||||||||| || || ||||| | || Sbjct 1363 TGGCCCGGAAGAGGTGGTCCTTCTCGATCGGATCTTTAACGTAGGTGTCGATGAGGAGCG 1304 Query 42354 TATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCT 42413 |||||||| || || ||||| || || || ||||| || |||||||| || | |||| Sbjct 1303 AGTACATTTCCGAGTGGATGTTCTCGATAGCGATCTGGAAGCCGTAGAAGCAGCGCGCCT 1244 Query 42414 CGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCAC 42473 ||| ||||| ||||| | || || |||| | || ||| || || || || | Sbjct 1243 CGGGCACCTGCACTTCCTTCATGAAGCGGCCAGCCAGGTTCTCGGCGACGATGCCATCGC 1184 Query 42474 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC 42519 |||| || || || |||| || || || || || | || ||||| Sbjct 1183 TGGCGGCGAAGAAGGCCAGCACGTGCTTGATGAAGTGCTTCTCGTC 1138 >seq283 Length=14928 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/129 (78%), Gaps = 3/129 (2%) Strand=Plus/Minus Query 42080 TGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCA 42139 |||| || ||||||| |||||| | ||||||||||| | ||| |||||||| || || Sbjct 2996 TGCATCCCTTCATCTCGACTAATGAGCTCGTTGGAAAAGGCGAGGCCGGGCATGAGTCCG 2937 Query 42140 CGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAAGATTCCTTCTACTGC 42198 ||||| || |||| ||| || || ||| || || ||||| |||||||| || || || || Sbjct 2936 CGCTTCTTGAGCC-AAAGATGGA-GCAGAAGGAGCCAGAGAAGAAGATGCCCTCGACGGC 2879 Query 42199 CGCAAAGGC 42207 ||||| || Sbjct 2878 GGCAAACGC 2870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670746591957240