Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq8173 93.3 4e-14 seq34906 89.7 5e-13 seq2671 82.4 8e-11 >seq8173 Length=3122 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/229 (69%), Gaps = 10/229 (4%) Strand=Plus/Minus Query 50632 GAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGC 50691 || || ||||| ||||| || ||||| ||||||| | | |||||||| | | ||| Sbjct 1462 GAGGCTGTCGAGATCGAGAAGGAGTTCGTCACGGAATCGCTGCCCGTGGCTCTTATTGGC 1403 Query 50692 ATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGA-CAGATTGTTGTTG-- 50748 |||||||| || | |||||| ||||||| ||||| || || || | | || | || | Sbjct 1402 ATGAACGCCAACCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGGCTTCTCGTCGCT 1343 Query 50749 --CAGCTGGGACAACCGAAATACTATAATGCACGTAACCCCTTTCCGTTTATGAATAACA 50806 | |||| ||||| | |||| || || |||||| || |||| ||| | | Sbjct 1342 CTCGGCTGTGACAAGC-----ACTACAACTCATCTAACCCGTTCCCGTGGATGGAGCTTA 1288 Query 50807 TATCGTTGGAGGGCAAAACAAACTTTTTCGAAAGACGTGTAGGCGAATA 50855 | ||| | || ||||| || ||||| |||||| | || || ||||| || Sbjct 1287 TTTCGCTTGAAGGCAAGACCAACTTCTTCGAACGCCGCGTTGGCGAGTA 1239 >seq34906 Length=1558 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/229 (69%), Gaps = 10/229 (4%) Strand=Plus/Plus Query 50632 GAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGC 50691 || || ||||| ||||| || ||||| ||||||| | | |||||||| | | ||| Sbjct 118 GAGGCTGTCGAGATCGAGAAGGAGTTCGTCACGGAATCGCTGCCCGTGGCTCTTATTGGC 177 Query 50692 ATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGA-CAGATTGTTGTTG-- 50748 |||||||| || | |||||| ||||||| ||||| || || || | | || | || | Sbjct 178 ATGAACGCCAACCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGGCTTCTCGTCGCT 237 Query 50749 --CAGCTGGGACAACCGAAATACTATAATGCACGTAACCCCTTTCCGTTTATGAATAACA 50806 | |||| ||||| | |||| || || ||||| || |||| ||| | | Sbjct 238 CTCGGCTGTGACAAGC-----ACTACAACTCATCCAACCCGTTCCCGTGGATGGAGCTTA 292 Query 50807 TATCGTTGGAGGGCAAAACAAACTTTTTCGAAAGACGTGTAGGCGAATA 50855 | ||| | || ||||| || ||||| |||||| | || || ||||| || Sbjct 293 TTTCGCTTGAAGGCAAGACCAACTTCTTCGAACGCCGCGTTGGCGAGTA 341 >seq2671 Length=7052 Score = 82.4 bits (90), Expect = 8e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 50632 GAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGC 50691 || |||||||| ||||| || |||||| ||||||| | | || ||||| | | ||| Sbjct 2931 GAGGCCGTCGAGATCGAGAAGGAGTTTGTCACGGAGTCACTCCCGGTGGCGCTCATCGGC 2872 Query 50692 ATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGAC 50736 |||||||||| | | |||||| ||||||| ||||||| || ||| Sbjct 2871 ATGAACGCAGGCCTCATGTGCCAGTACATCGAGTTTGCCGCCGAC 2827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506717802913680