Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq8173 170 3e-37 seq960 152 8e-32 seq2671 134 2e-26 seq283 107 3e-18 seq21360 105 1e-17 seq18213 95.1 2e-14 >seq8173 Length=3122 Score = 170 bits (188), Expect = 3e-37 Identities = 401/590 (68%), Gaps = 24/590 (4%) Strand=Plus/Minus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 ||||| |||||| | || || ||||||||| |||||||| ||||| ||||||| || Sbjct 2104 CTGTTCCCCATCCGCTACCAGCGCATTTGGGAGATGTACAAGAAGGCCGAGGCCTCGTTC 2045 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||| | ||| ||||||||| || | ||| || | | |||| ||| | | Sbjct 2044 TGGACCGCCGAGGAGGTCGATTTGAGCGCCGACATGAAGCACTGGGCT--TCGCT---CA 1990 Query 125115 GAAACTGAGCGAGAG----TTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGG 125170 | ||| || ||||| || || |||| | |||||||||| |||| | |||||| Sbjct 1989 GCAAC-GA-CGAGAAGCACTTCATCAAGCACGTGCTGGCCTTCTTCGCCGCCAGCGATGG 1932 Query 125171 AATCGTCAACGACAATCTGT-TGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGT 125229 |||||| ||| || ||| || | || ||| | || || | || |||| | Sbjct 1931 CATCGTCGCCGAGAACCTGGCTGGC-CGCTTCATGAAGGAAGTGCAAGTGCCCGAGGCGC 1873 Query 125230 CGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACAC 125289 ||||| ||||| ||||| ||| || |||||| | ||||||||||||||||| | Sbjct 1872 GCTGCTTCTACGGCTTCCAGATCGCTATCGAGAACATCCACTCGGAAATGTACTCGCTCC 1813 Query 125290 TGATTGACATGTACATTCGCGATCCGCAACGTAAAC-ACATGCTCTTTAACGCAATCGAC 125348 | || |||| ||| || |||||| | || || || ||||| || || || Sbjct 1812 TCATCGACACCTACGTTAAAGATCCG-ATCGAGAAGGACCACCTCTTCCGGGCCATGGAG 1754 Query 125349 ACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGAT---CGATGACGAC 125405 || ||||| || | || ||||| | |||| || || ||||| | | || | Sbjct 1753 ACTGTGCCCTCGGTGAAGAAGAAGGCCGAGTGGGCCATGCGCTGGATTTGCAAGGAGGGT 1694 Query 125406 AAGTCTT--CGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTT 125463 ||| | | | |||| | || | | |||||||| || |||||||||||||| | Sbjct 1693 --GTCGAGACCTTCCCCGAGCGTCTCATCGGCTTCGCCGCGGTCGAGGGCATCTTCTTCT 1636 Query 125464 CGGGTAGTTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACG 125522 | || ||| ||| ||||||| ||||||||||||||||| || |||||||| || | Sbjct 1635 CCGGCTCTTTCTGCT-CCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCCGGTCTTGCC 1577 Query 125523 CACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 ||| |||||| |||| || |||||||| || ||||| |||||||| Sbjct 1576 TTCAGCAACGAGCTTATCAGCCGCGACGAGGGTCTGCACTGCGACTTTGC 1527 >seq960 Length=8959 Score = 152 bits (168), Expect = 8e-32 Identities = 380/573 (66%), Gaps = 8/573 (1%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACG 96865 || ||||||| | | | || || || || ||||| | | ||||| | || || | || Sbjct 7764 ACCAACGGCACCTCGAACGGTCTCGTCCCGATGCTGCGCGTCTACAACGACACTGCC-CG 7822 Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925 ||||| ||||||||| || || ||||| | ||| |||| | || || || Sbjct 7823 CTACGTCGACCAGGGCGGCGGCAAGCGCAAGGGCGCCTTTGCCATCTATCTCGAGCCGTG 7882 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985 |||||| ||| | ||||||||| | ||| | || ||| ||| || ||| || Sbjct 7883 GCACGCCGACATCTTTGACTTTTTGGAGCTCAAGAAGAACCACGGCAAGGAGGAGAACCG 7942 Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGA 97045 || | ||| | || || | || ||| | || || | ||||||||||||||| | Sbjct 7943 CGCTCGCGACCTCTTCTACGGCCTGTGGATCCCCGACCTCTTCATGAAGCGCGTCGAGTC 8002 Query 97046 CGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGG 97105 || ||| ||||| || | |||||| || | | ||||| |||| || | ||||| Sbjct 8003 TGGCGGCGACTGGTCGCTCTTCTGCCCCAACGAGGCGCCCGGCCTGTTTGACTCGTGGGG 8062 Query 97106 CGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACG--- 97162 | | |||||||||| ||||| | |||||||| |||||||| || | || Sbjct 8063 CAAGGAGTTTGAGGAGAAGTATGAGCGCTACGAGCTGGAGGGCCG---CGCCCGCCGGGT 8119 Query 97163 AGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCC 97222 ||| | || | || || ||| || ||| | | | ||| | |||||||| || || Sbjct 8120 GGTCAAGGCCCAGGAGCTCTGGTTTGCGATCCTCGAGTCGCAGATCGAGACTGGCACGCC 8179 Query 97223 GTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCAT 97282 ||||| ||||||||||| || || |||| ||||| | ||| ||||||| || Sbjct 8180 CTACATGCTCTACAAGGACGCCTGCAACAGCAAGTCGAACCAGCAGCACCTGGGCACGAT 8239 Query 97283 CAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGT 97342 | || || || ||||||||||| | | ||||| |||| || ||||| ||| || Sbjct 8240 CCAGTCGTCGAACCTGTGCACGGAGGTCATCCAGTACACCTCGCCCGACGAAGTGGCCGT 8299 Query 97343 TTGCGTTCTGGCATCGGTCAATCTGCCCAAGTT 97375 ||| ||||| ||| || ||||||||||| Sbjct 8300 GTGCAACCTGGCCTCGATCGCCCTGCCCAAGTT 8332 >seq2671 Length=7052 Score = 134 bits (148), Expect = 2e-26 Identities = 390/589 (66%), Gaps = 20/589 (3%) Strand=Plus/Minus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 ||||| |||||| | || || ||| ||||| |||||||| ||||| |||||||||| Sbjct 3573 CTGTTCCCCATCCGCTACCAGCGCATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTC 3514 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||| | ||| ||||||||||| | | ||| || | | ||| | ||| | || Sbjct 3513 TGGACAGCCGAGGAGGTCGATCTCGGCGACGACATGAAGCACTGGCAATCTCTCTCAGCT 3454 Query 125115 GA--AACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAA 125172 || ||| ||| | || || |||| || |||| |||||||||| ||| || | Sbjct 3453 GACGAAC--AGC---ACTTCATCAAGCACGTTCTGGCATTCTTTGCCGCTAGCGACGGCA 3399 Query 125173 TCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGT 125232 | || || || || || ||| ||||| || | || |||| | Sbjct 3398 TTGTGGCGGAGAACTTGGCCGGTCGCTTCATGAAAGAGGTGCAAGTGCCCGAGGCACGAT 3339 Query 125233 GCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292 |||| || || |||||||| || |||||| | ||||| || | ||||| || Sbjct 3338 GCTTCTATGGCTTCCAAATAGCCATCGAGAACATCCACTCAGAGACCTACTCGCTCCTCC 3279 Query 125293 TTGACATGTACATTCGCGATCCGCAACGTAAA--CACATGCTCTTTAACGCAATCGACAC 125350 | || | ||| | || || | || || | ||| ||||| || || ||||| || Sbjct 3278 TGGATACCTACGTCAAGGACCC-CGTCGAGAAGGCCCAT-CTCTTCAATGCCATCGAAAC 3221 Query 125351 GGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTC 125410 |||||| || | || ||||| | |||| ||| || |||||| | | || | | Sbjct 3220 GGTGCCCTCGGTGAAGAAGAAGGCCGAGTGGGCGATGCGATGGATCAACAAGGAG--GGC 3163 Query 125411 TTCGT-AC----GCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCG 125465 ||| || ||||| | || || | |||||||| || |||||||||||||| ||| Sbjct 3162 GTCGACACCTTTGCCGAGCGCCTCGTTGGGTTCGCCGCAGTCGAGGGCATCTTCTTCTCG 3103 Query 125466 GG-TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCA 125524 || | || || ||||||| ||||||||||| ||||| ||||||||||| || | Sbjct 3102 GGCTCCTTCTGTT-CCATCTTCTGGCTCAAGAAACGCGGTCTCATGCCCGGCCTCGCCTT 3044 Query 125525 CAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 | |||||| | || || ||||||||||| ||| || |||||| Sbjct 3043 CTCCAACGAGCTCATCAGCCGCGACGAGGGCCTGCACGCCGAGTTTGCC 2995 >seq283 Length=14928 Score = 107 bits (118), Expect = 3e-18 Identities = 400/612 (65%), Gaps = 35/612 (6%) Strand=Plus/Plus Query 125273 GGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCT 125332 ||| |||||||| | || || |||| ||| | |||||||| || || || Sbjct 2707 GGAGATGTACTCGATCCTCATCGACACCTACGTCAAAGATCCGCAGGAGAAGAACCACCT 2766 Query 125333 CTTTAACGCAATCGACACGGTGCCGTCTATACGTAAA----AAGGCTCAATGGGTGATTC 125388 ||| ||||| ||||| || |||||||| || || ||||| | |||| | | Sbjct 2767 CTTCAACGCCATCGAGACCGTGCCGTCG----GTCAAGCGCAAGGCCGAGTGGGCGCTCA 2822 Query 125389 GGTGGATCG---ATGACG-ACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCC 125444 |||||||| | || | || | | | | | |||| | || ||||| || |||||| Sbjct 2823 AGTGGATCGCCAAGGAGGGACTCGACA-CATTCCCCGAACGCCTCGTGGCGTTTGCCGCC 2881 Query 125445 GTAGAGGGCATCTTCTTTTCGGG-TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGG 125503 || |||||||||||||| || || | || ||| |||||||| |||||||||||||||| Sbjct 2882 GTCGAGGGCATCTTCTTCTCTGGCTCCTTCTGCT-CCATCTTT-GGCTCAAGAAGCGCGG 2939 Query 125504 ACTCATGCCCGGACTGACGCACAGT--AACGAGTTTATATCTCGAGACGAGGGCCTACAC 125561 |||||||||||| || ||| | |||||| | || |||||| || || | || Sbjct 2940 ACTCATGCCCGGCCT--CGCCTTTTCCAACGAGCTCATTAGTCGAGATGAAGGGATGCAT 2997 Query 125562 TGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGAT 125621 ||||||||| || || | ||| || | || || | || | Sbjct 2998 GCCGACTTTGCCTGCCTCCTCTACAGCA------TG---CTCGTCAACAAACCCTCGGTG 3048 Query 125622 GAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAA 125681 || | || | || | ||| ||||| ||| || | |||||| | || ||| Sbjct 3049 GACGTGCCCAAGCAGATCATCCTCGAAGCCGTCGAGATTGAGAAGGAGTTTGTCACAGAA 3108 Query 125682 TCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTT 125741 || || ||||| | || ||||||||| | ||| ||||| |||| || || || Sbjct 3109 TCGCTGCCGGTGTCGCTCATCGGCATGAACGCCGGGCTCATGTGTCAGTATATCGAATTC 3168 Query 125742 GTGGCAGATCGTCTACTGTACGAGTT--GATTGGCCGCAAGATTTACAACGCCAAGAATC 125799 ||||| ||||| || ||| | | ||| ||| |||| |||||| | | ||||| Sbjct 3169 GTGGCCGATCGCCTGCTGGTGGCCCTCGGAT--GCCCCAAGCACTACAACTCAACGAATC 3226 Query 125800 CCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAG- 125858 |||| | ||| ||| ||||| ||||| ||||||||||| || ||| |||| Sbjct 3227 CCTTCCCGTGGATGGAGCTCATCTCACTCGAGGGCAAGACCAACTTCTTTGAG-CGAAGA 3285 Query 125859 GTCAGCGAGTAC 125870 || |||||||| Sbjct 3286 GTGGGCGAGTAC 3297 >seq21360 Length=1073 Score = 105 bits (116), Expect = 1e-17 Identities = 163/228 (71%), Gaps = 11/228 (5%) Strand=Plus/Plus Query 98038 TCTACAAGACTGTCTGGGAGATTCCGACCAAGACGC--TGATCGATATGGCTGCCGACAG 98095 |||||||||| || |||||| | || ||| || | ||||| ||||| |||||| | Sbjct 796 TCTACAAGACGGTATGGGAGCTGCC--CCAGCGCGTCATCATCGACATGGCCGCCGACCG 853 Query 98096 AGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTA--- 98152 | |||||| |||||||| || ||| |||| | ||| | | ||||||| | | Sbjct 854 CTCGGCCTACATCGACCAGAGCCAGTCGCTCAACGTCTACATGGGCGAGCCCTCGTTTGC 913 Query 98153 CAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTA 98212 || | | || ||||| ||||| ||||| ||| |||||||||||||||||||||||| Sbjct 914 CAAGC---TCACCTCGATGCACTTCTACGCCTGGCGCAAGGGCCTCAAGACGGGCATGTA 970 Query 98213 CTATCTGAGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTGGA 98260 ||| ||| | || | | ||| |||| || || | || ||||| || Sbjct 971 CTACCTGCGCAC-CCGGCCGCCGCCAACGCGATCCAGTTCACGGTCGA 1017 >seq18213 Length=2148 Score = 95.1 bits (104), Expect = 2e-14 Identities = 186/275 (68%), Gaps = 0/275 (0%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||||||| || || ||||| | ||| ||||| | || || |||||||| ||| Sbjct 305 CAGGGCGGCGGCAAGCGCAAGGGCGCCTTTGCCATCTACCTCGAGCCGTGGCACGCCGAC 246 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 | ||||||||| | ||| | || ||| ||| || ||| || || | ||| Sbjct 245 ATCTTTGACTTTTTGGAGCTCAAGAAGAACCACGGCAAGGAGGAGAACCGCGCTCGCGAC 186 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 | || || | || ||| | || || | ||||||||||||||| | || ||| || Sbjct 185 CTCTTCTACGGCCTGTGGATCCCCGACCTCTTCATGAAGCGCGTCGAGTCTGGCGGCGAC 126 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 ||| || | |||||| || | | ||||| |||| || | |||||| | |||||| Sbjct 125 TGGTCGCTCTTCTGCCCCAACGAGGCGCCCGGCCTGTTTGACTCGTGGGGCAAGGAGTTT 66 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG 97150 |||| ||||| | |||||||| |||||||| Sbjct 65 GAGGAGAAGTATGAGCGCTACGAGCTGGAGGGCCG 31 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740625689631240